Miyakogusa Predicted Gene
- Lj3g3v3177300.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3177300.1 Non Chatacterized Hit- tr|I1LK48|I1LK48_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.34613 PE,70,0,no
description,Nucleotide-binding, alpha-beta plait; RRM,RNA recognition
motif domain; RNA-binding d,CUFF.45379.1
(738 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74183 similar to UniRef100_Q68VB5 Cluster: ALY protei... 710 0.0
gnl|LJGI|TC76238 weakly similar to UniRef100_Q708X1 Cluster: RNA... 377 e-104
gnl|LJGI|AV412160 similar to UniRef100_Q68VB5 Cluster: ALY prote... 313 8e-85
gnl|LJGI|BW606413 homologue to UniRef100_A9RE63 Cluster: Predict... 270 1e-71
gnl|LJGI|TC69813 similar to UniRef100_A7NZ48 Cluster: Chromosome... 234 6e-61
gnl|LJGI|TC75795 similar to UniRef100_A7NZ48 Cluster: Chromosome... 111 6e-24
gnl|LJGI|BP036493 homologue to UniRef100_A7NZ48 Cluster: Chromos... 84 1e-15
gnl|LJGI|BW620333 similar to UniRef100_Q68VB5 Cluster: ALY prote... 72 5e-12
>gnl|LJGI|TC74183 similar to UniRef100_Q68VB5 Cluster: ALY protein; n=1; Nicotiana
benthamiana|Rep: ALY protein - Nicotiana benthamiana,
partial (26%)
Length = 480
Score = 710 bits (358), Expect = 0.0
Identities = 358/358 (100%)
Strand = Plus / Plus
Query: 1 atgtctgcaggtctcgatatgaccctcgacgacctcatcaaaaccaacaaaaaatccgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 atgtctgcaggtctcgatatgaccctcgacgacctcatcaaaaccaacaaaaaatccgga 182
Query: 61 tccggaaacttcaggggccgctccggacccggacccgctcgccgcatccccaaccgctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tccggaaacttcaggggccgctccggacccggacccgctcgccgcatccccaaccgctcc 242
Query: 121 ggcaaccgcaccgcgccatacgccgccaccgctaaggcgccggagaccgcgtggcagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggcaaccgcaccgcgccatacgccgccaccgctaaggcgccggagaccgcgtggcagcac 302
Query: 181 gatttgtatggagatcaggctttgccgccgtaccctgtggctcacgatgctcgtgcaccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gatttgtatggagatcaggctttgccgccgtaccctgtggctcacgatgctcgtgcaccg 362
Query: 241 ccttccttagaaactgggaccaagctcctcatatctaatttggattatggtgtttccaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ccttccttagaaactgggaccaagctcctcatatctaatttggattatggtgtttccaat 422
Query: 301 gatgatattaaggaattgtttggtgaagttggtgacttgaaacgacatggcgttgatt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gatgatattaaggaattgtttggtgaagttggtgacttgaaacgacatggcgttgatt 480
>gnl|LJGI|TC76238 weakly similar to UniRef100_Q708X1 Cluster: RNA and export binding
protein; n=1; Cicer arietinum|Rep: RNA and export
binding protein - Cicer arietinum (Chickpea) (Garbanzo),
partial (96%)
Length = 708
Score = 377 bits (190), Expect = e-104
Identities = 196/198 (98%)
Strand = Plus / Plus
Query: 541 aacaggattggagttcctcaaagtagacaaggaagaggaggggcattacgaaggccagga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aacaggattggagttcctcaaagtagacaaggaagaggaggggcattacgaaggccagga 63
Query: 601 ggtagagggcaaggcattcgagggaatcggggacgtggaagaggccgcggtggaggtcgt 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 64 ggtagagggcaaggcattcgagggaatcggggacgtgaaagaggccgcggtggaggtcgt 123
Query: 661 gatgaaaaggtttctgcagaagatcttgatgctgatttggagaagtatcatgcagagtca 720
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gatgaaaaggtttctgcaaaagatcttgatgctgatttggagaagtatcatgcagagtca 183
Query: 721 atgcaattgaactaaaga 738
||||||||||||||||||
Sbjct: 184 atgcaattgaactaaaga 201
>gnl|LJGI|AV412160 similar to UniRef100_Q68VB5 Cluster: ALY protein; n=1; Nicotiana
benthamiana|Rep: ALY protein - Nicotiana benthamiana,
partial (18%)
Length = 407
Score = 313 bits (158), Expect = 8e-85
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 1 atgtctgcaggtctcgatatgaccctcgacgacctcatcaaaaccaacaaaaaatccgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 atgtctgcaggtctcgatatgaccctcgacgacctcatcaaaaccaacaaaaaatccgga 157
Query: 61 tccggaaacttcaggggccgctccggacccggacccgctcgccgcatccccaaccgctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tccggaaacttcaggggccgctccggacccggacccgctcgccgcatccccaaccgctcc 217
Query: 121 ggcaaccgcaccgcgccatacgccgccaccgctaaggc 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ggcaaccgcaccgcgccatacgccgccaccgctaaggc 255
Score = 83.8 bits (42), Expect = 1e-15
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 155 aggcgccggagaccgcgtggcagcacgatttgtatggagatc 196
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aggcgccggagaccgcgtggcagcacgatttgtatggagatc 407
>gnl|LJGI|BW606413 homologue to UniRef100_A9RE63 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(18%)
Length = 454
Score = 270 bits (136), Expect = 1e-71
Identities = 166/176 (94%)
Strand = Plus / Plus
Query: 180 cgatttgtatggagatcaggctttgccgccgtaccctgtggctcacgatgctcgtgcacc 239
|||||| |||| ||||||||| ||||||||||||||| ||||||| |||||||||||||
Sbjct: 279 cgatttttatgacgatcaggctgtgccgccgtaccctggggctcactatgctcgtgcacc 338
Query: 240 gccttccttagaaactgggaccaagctcctcatatctaatttggattatggtgtttccaa 299
| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 339 gacttccttagaaactgggaccaaactcctcatatctaatttggattatggagtttccaa 398
Query: 300 tgatgatattaaggaattgtttggtgaagttggtgacttgaaacgacatggcgttg 355
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgatgatattaatgaattgtttggtgaagttggtgacttgaaacgacatggcgttg 454
Score = 168 bits (85), Expect = 3e-41
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 atgtctgcaggtctcgatatgaccctcgacgacctcatcaaaaccaacaaaaaatccgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 atgtctgcaggtctcgatatgaccctcgacgacctcatcaaaaccaacaaaaaatccgga 159
Query: 61 tccggaaacttcaggggccgctccggacc 89
||||||||||||||||||||||| |||||
Sbjct: 160 tccggaaacttcaggggccgctctggacc 188
>gnl|LJGI|TC69813 similar to UniRef100_A7NZ48 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (71%)
Length = 1188
Score = 234 bits (118), Expect = 6e-61
Identities = 247/290 (85%)
Strand = Plus / Plus
Query: 250 gaaactgggaccaagctcctcatatctaatttggattatggtgtttccaatgatgatatt 309
||||| |||||||||||| ||| || || |||||||| |||||||||| |||||||||
Sbjct: 409 gaaacggggaccaagctctacatttccaacttggattacggtgtttccagtgatgatatc 468
Query: 310 aaggaattgtttggtgaagttggtgacttgaaacgacatggcgttgattatgacaggagt 369
|||||||||||| ||||||||||||| ||||||| ||| ||| |||| ||||||||
Sbjct: 469 aaggaattgttttctgaagttggtgacctgaaacggcatactgttcattacgacaggagc 528
Query: 370 ggcagatcaaagggttctgcagtagtagtcttctcacgacgagctgatgctatagctgct 429
|| ||||| |||||| |||||| |||||||||||||||||||| ||||||| |||||||
Sbjct: 529 gggagatcgaagggtactgcagaagtagtcttctcacgacgaggtgatgctgaagctgct 588
Query: 430 gtgaagaggtacaacaatgttcaactagatgggaaaccaatgaaagtagagattgtggga 489
|||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct: 589 gtgaagagatacaacaatgttcaactagatgggaagccgatgaagatagagattgtgggc 648
Query: 490 gcaaacatttcttcacctagtgtgccccctgctttaagtggagcttttgg 539
|||||||| || ||||| ||| | |||||| || ||||||||||||
Sbjct: 649 acaaacattactacacctgctgttgcacctgctgcaaatggagcttttgg 698
Score = 127 bits (64), Expect = 1e-28
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 655 ggtcgtgatgaaaaggtttctgcagaagatcttgatgctgatttggagaagtatcatgca 714
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ggtcgtggtgaaaaggtatctgcagaagatcttgatgctgatttggagaagtatcatgct 888
Query: 715 gagtcaatgcaattgaactaaaga 738
|||||||||||||| |||| ||||
Sbjct: 889 gagtcaatgcaattaaactgaaga 912
Score = 69.9 bits (35), Expect = 2e-11
Identities = 79/93 (84%), Gaps = 3/93 (3%)
Strand = Plus / Plus
Query: 82 tccggacccggacccgctcgccgcatccccaaccgctccggcaaccgcaccgcgccatac 141
||||||||||| |||||||||||||| ||||||||| || ||| ||| ||||||| |||
Sbjct: 241 tccggacccggccccgctcgccgcattcccaaccgcgcctccaatcgcgccgcgccgtac 300
Query: 142 gccgccaccgctaaggcgccggagaccgcgtgg 174
|||| || ||||||| |||||||| ||||||
Sbjct: 301 gccg---cccctaaggcaccggagacggcgtgg 330
Score = 58.0 bits (29), Expect = 8e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 1 atgtctgcaggtctcgatatgaccctcgacgacctcatcaa 41
|||||||||| |||||| ||||||||||||||| |||||||
Sbjct: 145 atgtctgcagctctcgacatgaccctcgacgacatcatcaa 185
>gnl|LJGI|TC75795 similar to UniRef100_A7NZ48 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 672
Score = 111 bits (56), Expect = 6e-24
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 655 ggtcgtgatgaaaaggtttctgcagaagatcttgatgctgatttggagaagtatcatgca 714
||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 66 ggtcgtggtgaaaaggtatctgcagaagatcttgatgatgatttggagaagtatcatgtt 125
Query: 715 gagtcaatgcaattgaactaaaga 738
|||||||||||||| |||| ||||
Sbjct: 126 gagtcaatgcaattaaactgaaga 149
>gnl|LJGI|BP036493 homologue to UniRef100_A7NZ48 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 548
Score = 83.8 bits (42), Expect = 1e-15
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 426 tgctgtgaagaggtacaacaatgttcaactagatgggaaaccaatgaaagtagagattgt 485
|||||||||||| |||||| ||||||||||||||||||| || ||||| ||||||||||
Sbjct: 548 tgctgtgaagagatacaaccatgttcaactagatgggaagccgatgaagatagagattgt 489
Query: 486 gggagcaaacatttcttcacct 507
||| |||||||| || |||||
Sbjct: 488 gggcacaaacattactacacct 467
>gnl|LJGI|BW620333 similar to UniRef100_Q68VB5 Cluster: ALY protein; n=1; Nicotiana
benthamiana|Rep: ALY protein - Nicotiana benthamiana,
partial (38%)
Length = 522
Score = 71.9 bits (36), Expect = 5e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 250 gaaactgggaccaagctcctcatatctaatttggattatggtgtttccaatgatgatatt 309
||||| |||||||||||| ||| || || |||||||| |||||||||| |||||||||
Sbjct: 445 gaaacggggaccaagctctacatttccaacttggattacggtgtttccagtgatgatatc 504
Query: 310 aaggaattgttt 321
||||||||||||
Sbjct: 505 aaggaattgttt 516
Score = 69.9 bits (35), Expect = 2e-11
Identities = 79/93 (84%), Gaps = 3/93 (3%)
Strand = Plus / Plus
Query: 82 tccggacccggacccgctcgccgcatccccaaccgctccggcaaccgcaccgcgccatac 141
||||||||||| |||||||||||||| ||||||||| || ||| ||| ||||||| |||
Sbjct: 277 tccggacccggccccgctcgccgcattcccaaccgcgcctccaatcgcgccgcgccgtac 336
Query: 142 gccgccaccgctaaggcgccggagaccgcgtgg 174
|||| || ||||||| |||||||| ||||||
Sbjct: 337 gccg---cccctaaggcaccggagacggcgtgg 366
Score = 58.0 bits (29), Expect = 8e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 1 atgtctgcaggtctcgatatgaccctcgacgacctcatcaa 41
|||||||||| |||||| ||||||||||||||| |||||||
Sbjct: 181 atgtctgcagctctcgacatgaccctcgacgacatcatcaa 221