Miyakogusa Predicted Gene

Lj3g3v3118700.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v3118700.1 Non Chatacterized Hit- tr|I1KDR3|I1KDR3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.16337
PE,84.75,5e-19,Proteasom_PSMB,26S proteasome non-ATPase regulatory
subunit 5; 26S PROTEASOME NON-ATPASE REGULATORY ,CUFF.45329.1
         (396 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP036976 similar to UniRef100_A7P1S2 Cluster: Chromosom...   194   3e-49

>gnl|LJGI|BP036976 similar to UniRef100_A7P1S2 Cluster: Chromosome chr19 scaffold_4,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr19 scaffold_4, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (7%)
          Length = 290

 Score =  194 bits (98), Expect = 3e-49
 Identities = 170/185 (91%), Gaps = 13/185 (7%)
 Strand = Plus / Minus

                                                                       
Query: 224 acatgccttttgttcaagtcggtctgcaggcaga---ttctcaagc-agtcagat---cc 276
           |||||||||||||||||||||||||||||||||    ||||||||| |||||||    ||
Sbjct: 290 acatgccttttgttcaagtcggtctgcaggcagtaatttctcaagccagtcagaaatccc 231

                                                                       
Query: 277 ttag-cttgcaaaacagt-cact-tgccttc--tggataatct-tgataatgatcacaaa 330
           |||| ||||||||||||| |||| |||||||  |||||||||| ||||||||||||||||
Sbjct: 230 ttaggcttgcaaaacagttcactctgccttcnntggataatctntgataatgatcacaaa 171

                                                                       
Query: 331 gttgctgctcatctaatagcggaattcaacatatatcctcttttgcttgattgccttatc 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gttgctgctcatctaatagcggaattcaacatatatcctcttttgcttgattgccttatc 111

                
Query: 391 aaggg 395
           |||||
Sbjct: 110 aaggg 106