Miyakogusa Predicted Gene
- Lj3g3v3097580.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3097580.2 Non Chatacterized Hit- tr|I1M4P3|I1M4P3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.22757
PE,82.28,0,RRM_1,RNA recognition motif domain; RNA-binding domain,
RBD,NULL; RING/U-box,NULL; SUBFAMILY NOT NAM,CUFF.45309.2
(999 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73436 similar to UniRef100_A7NZC1 Cluster: Chromosome... 1245 0.0
gnl|LJGI|TC61415 similar to UniRef100_A7NZC1 Cluster: Chromosome... 640 0.0
gnl|LJGI|TC60629 weakly similar to UniRef100_A0AH88 Cluster: Com... 153 3e-36
gnl|LJGI|DC593592 similar to UniRef100_A7NZC1 Cluster: Chromosom... 90 3e-17
>gnl|LJGI|TC73436 similar to UniRef100_A7NZC1 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (22%)
Length = 768
Score = 1245 bits (628), Expect = 0.0
Identities = 642/649 (98%)
Strand = Plus / Plus
Query: 1 atgagtgatgaaggagaaaggacttgtcctctctgtgctgaagagatggatttgacagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atgagtgatgaaggagaaaggacttgtcctctctgtgctgaagagatggatttgacagat 179
Query: 61 cagcagctgaagccttgcaaatgtggttatgagatctgtgtctggtgttggcaccacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cagcagctgaagccttgcaaatgtggttatgagatctgtgtctggtgttggcaccacata 239
Query: 121 atggacatggctgagaaggatgacactgaggggcgatgcccagcgtgtcgttctccttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atggacatggctgagaaggatgacactgaggggcgatgcccagcgtgtcgttctccttat 299
Query: 181 gataagaaaaagatagttgggatggctgcaacctgtgagagattggtgagtgaaattcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gataagaaaaagatagttgggatggctgcaacctgtgagagattggtgagtgaaattcat 359
Query: 241 atggagaaaaagatgaagaatcnnnnnnngtctaaatcttctgatggaaggaagcaactt 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 360 atggagaaaaagatgaagaatcaaaaaaagtctaaatcttctgatggaaggaagcaactt 419
Query: 301 agcagtgtgagagtgattcagcgtaaccttgtttacatagtaggattgcctctcaatctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agcagtgtgagagtgattcagcgtaaccttgtttacatagtaggattgcctctcaatctg 479
Query: 361 gcagatgaagatcttctccagcggcgagagtactttgctcagtatgggaaggtcttaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gcagatgaagatcttctccagcggcgagagtactttgctcagtatgggaaggtcttaaaa 539
Query: 421 gtgtcgatgtctcggacagcagctggtgtcattcaacagtttccaaatgatacttgcagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gtgtcgatgtctcggacagcagctggtgtcattcaacagtttccaaatgatacttgcagt 599
Query: 481 gtatatattacttattcaaaggaagaggaagcaattcgttgtattcaaaatgtacatgga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gtatatattacttattcaaaggaagaggaagcaattcgttgtattcaaaatgtacatgga 659
Query: 541 tttattttggagggtagacctttaagggcttgttttggaaccacaaaatattgtcatgca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tttattttggagggtagacctttaagggcttgttttggaaccacaaaatattgtcatgca 719
Query: 601 tggctccggaatgcgccttgcagcaaccctgattgtctatatctgcatg 649
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tggctccggaatgcgccttgcagcaaccctgattgtctatatctgcatg 768
>gnl|LJGI|TC61415 similar to UniRef100_A7NZC1 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (22%)
Length = 790
Score = 640 bits (323), Expect = 0.0
Identities = 579/666 (86%), Gaps = 3/666 (0%)
Strand = Plus / Plus
Query: 1 atgagtgatgaaggagaaaggacttgtcctctctgtgctgaagagatggatttgacagat 60
|||||||| |||||||||||| | || ||||||||||||||||||||||||||||| |||
Sbjct: 125 atgagtgacgaaggagaaaggtcatgccctctctgtgctgaagagatggatttgactgat 184
Query: 61 cagcagctgaagccttgcaaatgtggttatgagatctgtgtctggtgttggcaccacata 120
|||||| |||| || ||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 185 cagcagttgaaaccatgcaaatgtggctatgagatatgtgtctggtgttggcatcacata 244
Query: 121 atggacatggctgagaaggatgacactgaggggcgatgcccagcgtgtcgttctccttat 180
|||||||||||||| ||||||||||| ||||| |||||||| || ||||||||||| |||
Sbjct: 245 atggacatggctgaaaaggatgacacagagggacgatgccctgcatgtcgttctccatat 304
Query: 181 gataagaaaaagatagttgggatggctgcaacctgtgagagattggtgagtgaaattcat 240
|||||| ||||||| || ||||||||| ||| |||||| |||||| || || | |||
Sbjct: 305 gataaggaaaagattgtcgggatggcttcaaactgtgacagattgttggctggggtccat 364
Query: 241 atggagaaaaagatgaagaatcnnnnnnng---tctaaatcttctgatggaaggaagcaa 297
||||| | ||| | ||||| | |||||||| ||||| ||| |||||||
Sbjct: 365 atggaaagaaaaacgaagagccagaaagcaaaatctaaatcatctgaaggacggaagcag 424
Query: 298 cttagcagtgtgagagtgattcagcgtaaccttgtttacatagtaggattgcctctcaat 357
|| || | |||| ||||||||||||| || |||||||||||| | |||||||| ||||||
Sbjct: 425 ctcagtaatgtgcgagtgattcagcggaatcttgtttacataatgggattgcccctcaat 484
Query: 358 ctggcagatgaagatcttctccagcggcgagagtactttgctcagtatgggaaggtctta 417
||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 485 ctggcagatgaagatcttctccagcggcgggagtattttggccagtatgggaaggtctta 544
Query: 418 aaagtgtcgatgtctcggacagcagctggtgtcattcaacagtttccaaatgatacttgc 477
|||||||| ||||| ||||||||||||||||| |||| |||||||| || |||||||
Sbjct: 545 aaagtgtcaatgtcccggacagcagctggtgttgttcagcagtttccgaacaatacttgt 604
Query: 478 agtgtatatattacttattcaaaggaagaggaagcaattcgttgtattcaaaatgtacat 537
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 605 agtgtatatattacttattcaaaggaagaagaagcaattcgatgcattcaaaatgtacat 664
Query: 538 ggatttattttggagggtagacctttaagggcttgttttggaaccacaaaatattgtcat 597
|||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 665 ggatttgttttggagggtagacctttaagggcttgttatggaaccactaaatattgtcat 724
Query: 598 gcatggctccggaatgcgccttgcagcaaccctgattgtctatatctgcatgagattggc 657
||||||||| | || |||||||||||| | |||||||||||||||||||||||||||
Sbjct: 725 gcatggctcagaaacatgccttgcagcaattcggattgtctatatctgcatgagattggc 784
Query: 658 tctcaa 663
||||||
Sbjct: 785 tctcaa 790
>gnl|LJGI|TC60629 weakly similar to UniRef100_A0AH88 Cluster: Complete genome; n=1;
Listeria welshimeri serovar 6b str. SLCC5334|Rep:
Complete genome - Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 /SLCC5334), partial (7%)
Length = 770
Score = 153 bits (77), Expect = 3e-36
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 923 cccagcctacaaattgtgcgccacctgttggaggtcaatcatatccaaatgggccgtcca 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccagcctacaaattgtgcgccacctgttggaggtcaatcatatccaaatgggccgtcca 60
Query: 983 tgccaaaacctgataca 999
|||||||||||||||||
Sbjct: 61 tgccaaaacctgataca 77
>gnl|LJGI|DC593592 similar to UniRef100_A7NZC1 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 588
Score = 89.7 bits (45), Expect = 3e-17
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 631 gattgtctatatctgcatgagattggctctcaagaagatagtttttcaaaagatgaaata 690
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 5 gattgtctatatctgcatgagattggctctcaagaagatagtttcataaaagatgatata 64
Query: 691 atttc 695
||||
Sbjct: 65 gtttc 69