Miyakogusa Predicted Gene

Lj3g3v3087300.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v3087300.1 tr|I3SSH7|I3SSH7_LOTJA DNA-directed RNA
polymerase subunit OS=Lotus japonicus PE=3
SV=1,85.71,0.0000000000001,seg,NULL; ZF_TFIIS_2,Zinc finger,
TFIIS-type; no description,NULL; C2C2 Zinc finger,Zinc finger,
TFI,CUFF.45299.1
         (177 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC66733 weakly similar to UniRef100_Q6EU09 Cluster: DNA...   155   1e-37
gnl|LJGI|TC80465 similar to UniRef100_Q5A5N9 Cluster: DNA-direct...   145   1e-34

>gnl|LJGI|TC66733 weakly similar to UniRef100_Q6EU09 Cluster: DNA-directed RNA
           polymerase subunit; n=1; Oryza sativa Japonica
           Group|Rep: DNA-directed RNA polymerase subunit - Oryza
           sativa subsp. japonica (Rice), partial (55%)
          Length = 691

 Score =  155 bits (78), Expect = 1e-37
 Identities = 111/122 (90%)
 Strand = Plus / Plus

                                                                       
Query: 52  cgatgccaaaaatgcagtcatgataaagctgcttacacagaatttcagactcgatcagct 111
           ||||||| ||| |||||||||||||||||||| ||||||||| | |||| ||||||||||
Sbjct: 411 cgatgcccaaattgcagtcatgataaagctgcctacacagaaatgcagattcgatcagct 470

                                                                       
Query: 112 gatgagccagcaactatattttacttgtgcttgaatgaaaagtgcaggtaccaatggcgt 171
           |||||||| |||||||||||||||| |||||||||||||||||| ||| | |||||||||
Sbjct: 471 gatgagcccgcaactatattttactggtgcttgaatgaaaagtgtaggcatcaatggcgt 530

             
Query: 172 ga 173
           ||
Sbjct: 531 ga 532


>gnl|LJGI|TC80465 similar to UniRef100_Q5A5N9 Cluster: DNA-directed RNA polymerase
           subunit; n=1; Candida albicans|Rep: DNA-directed RNA
           polymerase subunit - Candida albicans (Yeast), partial
           (29%)
          Length = 706

 Score =  145 bits (73), Expect = 1e-34
 Identities = 100/109 (91%)
 Strand = Plus / Plus

                                                                       
Query: 66  cagtcatgataaagctgcttacacagaatttcagactcgatcagctgatgagccagcaac 125
           |||||||||||||||||| ||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 400 cagtcatgataaagctgcctacacagaaatgcagattcgatcagctgatgagcccgcaac 459

                                                            
Query: 126 tatattttacttgtgcttgaatgaaaagtgcaggtaccaatggcgtgaa 174
           ||||||||||| |||||||||||||||||| ||| | ||||||||||||
Sbjct: 460 tatattttactggtgcttgaatgaaaagtgtaggcatcaatggcgtgaa 508