Miyakogusa Predicted Gene
- Lj3g3v3085550.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3085550.1 Non Chatacterized Hit- tr|A5BNI8|A5BNI8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,38.06,1e-18,dsRNA-binding domain-like,NULL; seg,NULL;
dsrm,Double-stranded RNA-binding; no
description,Double-st,CUFF.45252.1
(1206 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67545 homologue to UniRef100_A7NZJ7 Cluster: Chromoso... 1108 0.0
gnl|LJGI|TC67469 similar to UniRef100_A7NZJ7 Cluster: Chromosome... 670 0.0
gnl|LJGI|TC76447 similar to UniRef100_A7NZJ7 Cluster: Chromosome... 660 0.0
>gnl|LJGI|TC67545 homologue to UniRef100_A7NZJ7 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (48%)
Length = 790
Score = 1108 bits (559), Expect = 0.0
Identities = 559/559 (100%)
Strand = Plus / Plus
Query: 1 atgtacaagaaccagcttcaggagctggcgcaacggagctgcttcaacctcccttcctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 atgtacaagaaccagcttcaggagctggcgcaacggagctgcttcaacctcccttcctac 291
Query: 61 acgtgcctccgggaaggtcccgatcacgcgccgcgcttcaaggccaccgttaacttcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 acgtgcctccgggaaggtcccgatcacgcgccgcgcttcaaggccaccgttaacttcaac 351
Query: 121 ggcgagaccttcgagacccctcactactgctccacgcttcgccaggcggagcactccgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggcgagaccttcgagacccctcactactgctccacgcttcgccaggcggagcactccgcc 411
Query: 181 gctgaggtggctctcaattcactctcccaccgtggcccctctcactccctcgccgccaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gctgaggtggctctcaattcactctcccaccgtggcccctctcactccctcgccgccaag 471
Query: 241 atcctcgatgagacgggggtctacaagaacctcttacaggaaattgcgcaaagggtaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atcctcgatgagacgggggtctacaagaacctcttacaggaaattgcgcaaagggtaggg 531
Query: 301 gctccattgccacaatacacaacattcaggtcaggcctaggacacctacctgttttcact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gctccattgccacaatacacaacattcaggtcaggcctaggacacctacctgttttcact 591
Query: 361 gggactgtagaattagctggcattacatttactggtgaacctgccaagagtaagaaacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gggactgtagaattagctggcattacatttactggtgaacctgccaagagtaagaaacaa 651
Query: 421 gcagagaaaaatgcagctatggcagcatggtcgactcttaagcagttggcaaaagaaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gcagagaaaaatgcagctatggcagcatggtcgactcttaagcagttggcaaaagaaact 711
Query: 481 tcaagctcttcaactgaaccagagaacaatgatgaattagaacagatcaccatagcacgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tcaagctcttcaactgaaccagagaacaatgatgaattagaacagatcaccatagcacgg 771
Query: 541 gccttgttgaacttccgtc 559
|||||||||||||||||||
Sbjct: 772 gccttgttgaacttccgtc 790
>gnl|LJGI|TC67469 similar to UniRef100_A7NZJ7 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (74%)
Length = 1974
Score = 670 bits (338), Expect = 0.0
Identities = 623/718 (86%)
Strand = Plus / Plus
Query: 1 atgtacaagaaccagcttcaggagctggcgcaacggagctgcttcaacctcccttcctac 60
|||||||||||||||||||| ||||||||||| || ||||||||||| || |||||||||
Sbjct: 198 atgtacaagaaccagcttcaagagctggcgcagcgaagctgcttcaatcttccttcctac 257
Query: 61 acgtgcctccgggaaggtcccgatcacgcgccgcgcttcaaggccaccgttaacttcaac 120
|| ||| | ||||||||||| |||||||||||| | |||||||||||||| |||||||||
Sbjct: 258 acttgcattcgggaaggtcctgatcacgcgccgaggttcaaggccaccgtcaacttcaac 317
Query: 121 ggcgagaccttcgagacccctcactactgctccacgcttcgccaggcggagcactccgcc 180
||||||| |||||||| |||||||||||| || || || ||||||||||||||||||
Sbjct: 318 ggcgagatcttcgagagtcctcactactgcaatactctccgtcaggcggagcactccgcc 377
Query: 181 gctgaggtggctctcaattcactctcccaccgtggcccctctcactccctcgccgccaag 240
|||||||| ||||||| ||| |||||||||||||| || ||||||||||||||||| |||
Sbjct: 378 gctgaggtcgctctcagttcgctctcccaccgtggtccgtctcactccctcgccgctaag 437
Query: 241 atcctcgatgagacgggggtctacaagaacctcttacaggaaattgcgcaaagggtaggg 300
|||||||||||||| || ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 438 atcctcgatgagactggagtctacaagaatctcttacaggaaattgcacagagagtaggg 497
Query: 301 gctccattgccacaatacacaacattcaggtcaggcctaggacacctacctgttttcact 360
||||||||||| |||||||||||||||||||||||| |||| || |||||||||| |||
Sbjct: 498 gctccattgcctcaatacacaacattcaggtcaggcttagggcatttacctgtttttact 557
Query: 361 gggactgtagaattagctggcattacatttactggtgaacctgccaagagtaagaaacaa 420
|| | || || || ||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct: 558 ggaatagtggagttggctggaatcacatttactggtgaacctgccaagaataagaaacaa 617
Query: 421 gcagagaaaaatgcagctatggcagcatggtcgactcttaagcagttggcaaaagaaact 480
|| || |||||| | |||||||| || ||||| || | || || ||||| ||||| |||
Sbjct: 618 gctgaaaaaaattctgctatggcggcttggtcatctttaaaacaattggccaaagagact 677
Query: 481 tcaagctcttcaactgaaccagagaacaatgatgaattagaacagatcaccatagcacgg 540
| |||||||||| |||||||||||||||||| ||| ||||||||||||| || ||||||
Sbjct: 678 gctagctcttcaagtgaaccagagaacaatgacgaactagaacagatcactattgcacgg 737
Query: 541 gccttgttgaacttccgtctgaaggaaaagatgacaatgtcaaatcctaatgctccaatt 600
|| || |||||| ||||||||||||||||||| ||||||| |||| ||||||||||||
Sbjct: 738 gctttactgaactaccgtctgaaggaaaagatggcaatgtctgatccaaatgctccaatt 797
Query: 601 ccatttccgaaaaagtttcagtttcaaaatcccaggccaactagtcctcaacctctgcct 660
||||||| ||| ||||||||| |||||| |||||||||||| ||| ||||||||| ||
Sbjct: 798 ccatttcagaagaagtttcagattcaaagtcccaggccaaccagtactcaacctccaccc 857
Query: 661 gctgcaacatcaaagatacttcccctattttcccaaaagacagcacctcgaagcaggc 718
| |||||||||||| ||||| ||| ||| ||||||| ||||||||||||||||||
Sbjct: 858 cccaaaacatcaaagatccttcctctaatttgccaaaaggcagcacctcgaagcaggc 915
Score = 89.7 bits (45), Expect = 4e-17
Identities = 90/105 (85%)
Strand = Plus / Plus
Query: 819 aggagcagcaccttatgttcccattcgacaaatgcgatcaccttgccaagggatcgcccc 878
|||||||||||||||||||||| | ||||||||| ||||||||||||| ||| | || ||
Sbjct: 1091 aggagcagcaccttatgttcccctacgacaaatgagatcaccttgccatggggttgcacc 1150
Query: 879 tccagtgactataaggactgctgtacctgtattctccccaccacc 923
|||||||||| |||||| |||||||||||||| |||||||
Sbjct: 1151 tccagtgactgtaaggaacatggtacctgtattctctgcaccacc 1195
>gnl|LJGI|TC76447 similar to UniRef100_A7NZJ7 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (12%)
Length = 573
Score = 660 bits (333), Expect = 0.0
Identities = 333/333 (100%)
Strand = Plus / Plus
Query: 874 gcccctccagtgactataaggactgctgtacctgtattctccccaccaccggccacagtg 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcccctccagtgactataaggactgctgtacctgtattctccccaccaccggccacagtg 60
Query: 934 tcccatcatcaagtaatgcaggcttcttctatacgagttgctcctccggtcaatattcgg 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcccatcatcaagtaatgcaggcttcttctatacgagttgctcctccggtcaatattcgg 120
Query: 994 caagcagttccagtatacgctgctcccccagctcggatagatgaacctgctccaatccgc 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caagcagttccagtatacgctgctcccccagctcggatagatgaacctgctccaatccgc 180
Query: 1054 aaagataaaactgatgttaaggctgagagcatgaagattgaagaaccaccaactgtaaat 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaagataaaactgatgttaaggctgagagcatgaagattgaagaaccaccaactgtaaat 240
Query: 1114 gcccctagccaggaagataaaactgacactaagatgcagaacattcctccagaatctgag 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcccctagccaggaagataaaactgacactaagatgcagaacattcctccagaatctgag 300
Query: 1174 acaatgcagagcttgttgcagctgagaatttga 1206
|||||||||||||||||||||||||||||||||
Sbjct: 301 acaatgcagagcttgttgcagctgagaatttga 333