Miyakogusa Predicted Gene

Lj3g3v3084430.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v3084430.1 Non Chatacterized Hit- tr|G3VL28|G3VL28_SARHA
Uncharacterized protein (Fragment) OS=Sarcophilus harr,51.85,1e-17,no
description,Anticodon-binding; GLYCYL-TRNA SYNTHETASE,NULL;
GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE,gene.g50285.t1.1
         (298 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73747 similar to UniRef100_O23627 Cluster: Glycyl-tRN...   236   6e-62

>gnl|LJGI|TC73747 similar to UniRef100_O23627 Cluster: Glycyl-tRNA synthetase 1,
           mitochondrial precursor; n=3; Arabidopsis thaliana|Rep:
           Glycyl-tRNA synthetase 1, mitochondrial precursor -
           Arabidopsis thaliana (Mouse-ear cress), partial (27%)
          Length = 745

 Score =  236 bits (119), Expect = 6e-62
 Identities = 227/263 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaggccaagcaaagatggggataaacagttacgagtatttcgcttccctgcacttgta 60
           ||||| ||||| |||| ||| ||| || ||||||| |||||||||||||||||||| |||
Sbjct: 187 atgagaccaagtaaagctggagatgaagagttacgtgtatttcgcttccctgcactagta 246

                                                                       
Query: 61  gctcctattaagtgcacagtgctccctctggttcagaatcacaagttagaagaggttgct 120
           ||||||||||||||||||||| ||||||||||||||||||| |  || ||||  ||| ||
Sbjct: 247 gctcctattaagtgcacagtgttccctctggttcagaatcagacatttgaagcagtttct 306

                                                                       
Query: 121 aaactcatttccaattcattgactttagatggaattttacataagattgacattacagat 180
           |||||||||||||| ||||||||   || ||   ||| ||||||| |||||||||||| |
Sbjct: 307 aaactcatttccaagtcattgaccgcagctgatgtttcacataaggttgacattacaggt 366

                                                                       
Query: 181 acatcaattggaaaacagtatgcaagaacagatgaacttcgtgtgctatttgctatcact 240
           ||||| ||||||||||  || |||||||||||||||||| ||||||  ||||||||||||
Sbjct: 367 acatctattggaaaacgatacgcaagaacagatgaacttggtgtgccctttgctatcact 426

                                  
Query: 241 gtggactcagattcatcagtgac 263
           ||||| ||||| |||||||||||
Sbjct: 427 gtggattcagaatcatcagtgac 449



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 263 ccaccattcctctgcagctccacaagattgaatttt 298
           ||||||||||||||||||| || |||||||||||||
Sbjct: 567 ccaccattcctctgcagctgcagaagattgaatttt 602