Miyakogusa Predicted Gene
- Lj3g3v3033290.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3033290.1 tr|Q2PEZ1|Q2PEZ1_TRIPR DNA ligase (Fragment)
OS=Trifolium pratense PE=2 SV=1,82.68,0,coiled-coil,NULL;
DNA_LIGASE_A3,DNA ligase, ATP-dependent, central; DNA_ligase_A_M,DNA
ligase, ATP-d,CUFF.45181.1
(2334 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63847 similar to UniRef100_A7PQQ0 Cluster: Chromosome... 864 0.0
gnl|LJGI|TC64770 similar to UniRef100_A7PQQ0 Cluster: Chromosome... 795 0.0
gnl|LJGI|GO014824 similar to UniRef100_A7PQQ0 Cluster: Chromosom... 706 0.0
gnl|LJGI|GO006290 similar to UniRef100_A7PQQ0 Cluster: Chromosom... 145 1e-33
>gnl|LJGI|TC63847 similar to UniRef100_A7PQQ0 Cluster: Chromosome chr6 scaffold_25,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_25, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 804
Score = 864 bits (436), Expect = 0.0
Identities = 436/436 (100%)
Strand = Plus / Plus
Query: 274 gaaaccgttcaaccgcctagggattcagttgaaaccgttcaaccgtcatcggaagaagcc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaaaccgttcaaccgcctagggattcagttgaaaccgttcaaccgtcatcggaagaagcc 428
Query: 334 gttgaaactgtgcttcaaccggcgaagaagatttgcaacagcagcgggtctttgatcgcc 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gttgaaactgtgcttcaaccggcgaagaagatttgcaacagcagcgggtctttgatcgcc 488
Query: 394 gagttgaaggagctggccccgaggctcaagaagaagccgtcggagttcgatccgagtact 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gagttgaaggagctggccccgaggctcaagaagaagccgtcggagttcgatccgagtact 548
Query: 454 gtggtttgctgggagaagggaaaacccgtgccgttcctgttcttgtgcttggcgtttgac 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtggtttgctgggagaagggaaaacccgtgccgttcctgttcttgtgcttggcgtttgac 608
Query: 514 atgattgacaaggagtcagggaggattgtgatcacggacattgcgtgcaaccttctgaga 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atgattgacaaggagtcagggaggattgtgatcacggacattgcgtgcaaccttctgaga 668
Query: 574 acggtcatacacgctacgccggaggatcttgtgccggtggtctatttccttgcgaatagg 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 acggtcatacacgctacgccggaggatcttgtgccggtggtctatttccttgcgaatagg 728
Query: 634 attgctccggcgcatgaagggttggaattgggaattggtgatgcttccattatcaaggcg 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 attgctccggcgcatgaagggttggaattgggaattggtgatgcttccattatcaaggcg 788
Query: 694 ctcgcggagtcttgtg 709
||||||||||||||||
Sbjct: 789 ctcgcggagtcttgtg 804
Score = 387 bits (195), Expect = e-106
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 1 atgatccatttccgtccttacctctctcccccattcttatctcatcatcgaatcaccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 atgatccatttccgtccttacctctctcccccattcttatctcatcatcgaatcaccgcc 155
Query: 61 gtcaagcttttctctcttccctttctcaccctccctcgccgcgccatgtccaaaccaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gtcaagcttttctctcttccctttctcaccctccctcgccgcgccatgtccaaaccaccc 215
Query: 121 tccgccttcgacgccctaatgtccggcgcacgcgccgccgccgccaagaagaaaccacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tccgccttcgacgccctaatgtccggcgcacgcgccgccgccgccaagaagaaaccacct 275
Query: 181 ccaccttccgccgca 195
|||||||||||||||
Sbjct: 276 ccaccttccgccgca 290
>gnl|LJGI|TC64770 similar to UniRef100_A7PQQ0 Cluster: Chromosome chr6 scaffold_25,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_25, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 1133
Score = 795 bits (401), Expect = 0.0
Identities = 401/401 (100%)
Strand = Plus / Plus
Query: 1934 atgacaacagtaatgaagaatttcaaagtatttgtaagattggaactggattctctgaag 1993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgacaacagtaatgaagaatttcaaagtatttgtaagattggaactggattctctgaag 60
Query: 1994 atgttcttatagagcgttctaaaggcctccagactaaagtcattccgaagccaaaggcct 2053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgttcttatagagcgttctaaaggcctccagactaaagtcattccgaagccaaaggcct 120
Query: 2054 actatcggtatgcagaaacaataaatcctgatgtttggtttgaagccagtgaggtgtggg 2113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actatcggtatgcagaaacaataaatcctgatgtttggtttgaagccagtgaggtgtggg 180
Query: 2114 aggtgaaggctgcagacctgactattagccccgtttatcgagctgcagtgggtattgtag 2173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggtgaaggctgcagacctgactattagccccgtttatcgagctgcagtgggtattgtag 240
Query: 2174 attcaaacaagggcatatctcttcgatttccacgcctacttcgagtacggcctgacaaag 2233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attcaaacaagggcatatctcttcgatttccacgcctacttcgagtacggcctgacaaag 300
Query: 2234 atcctgagcaggccacatcgtctgagcaggttgctgaaatgtataatgctcagaaacaca 2293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcctgagcaggccacatcgtctgagcaggttgctgaaatgtataatgctcagaaacaca 360
Query: 2294 atcaaacggacaaccaaaatgacaatgaagatgattgaatg 2334
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atcaaacggacaaccaaaatgacaatgaagatgattgaatg 401
>gnl|LJGI|GO014824 similar to UniRef100_A7PQQ0 Cluster: Chromosome chr6 scaffold_25,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_25, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (17%)
Length = 787
Score = 706 bits (356), Expect = 0.0
Identities = 359/360 (99%)
Strand = Plus / Minus
Query: 1975 ggaactggattctctgaagatgttcttatagagcgttctaaaggcctccagactaaagtc 2034
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ggaactgggttctctgaagatgttcttatagagcgttctaaaggcctccagactaaagtc 589
Query: 2035 attccgaagccaaaggcctactatcggtatgcagaaacaataaatcctgatgtttggttt 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 attccgaagccaaaggcctactatcggtatgcagaaacaataaatcctgatgtttggttt 529
Query: 2095 gaagccagtgaggtgtgggaggtgaaggctgcagacctgactattagccccgtttatcga 2154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaagccagtgaggtgtgggaggtgaaggctgcagacctgactattagccccgtttatcga 469
Query: 2155 gctgcagtgggtattgtagattcaaacaagggcatatctcttcgatttccacgcctactt 2214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gctgcagtgggtattgtagattcaaacaagggcatatctcttcgatttccacgcctactt 409
Query: 2215 cgagtacggcctgacaaagatcctgagcaggccacatcgtctgagcaggttgctgaaatg 2274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cgagtacggcctgacaaagatcctgagcaggccacatcgtctgagcaggttgctgaaatg 349
Query: 2275 tataatgctcagaaacacaatcaaacggacaaccaaaatgacaatgaagatgattgaatg 2334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tataatgctcagaaacacaatcaaacggacaaccaaaatgacaatgaagatgattgaatg 289
Score = 89.7 bits (45), Expect = 7e-17
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 1932 ctatgacaacagtaatgaagaatttcaaagtatttgtaagattgg 1976
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ctatgacaacagtaatgaagaatttcaaagtatttgtaagattgg 743
>gnl|LJGI|GO006290 similar to UniRef100_A7PQQ0 Cluster: Chromosome chr6 scaffold_25,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_25, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (3%)
Length = 654
Score = 145 bits (73), Expect = 1e-33
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1625 agcatctctatgcctcttttgaggaagaatctggatattttcagtttgcaacagcaataa 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agcatctctatgcctcttttgaggaagaatctggatattttcagtttgcaacagcaataa 641
Query: 1685 catcaaatgatgt 1697
|||||||||||||
Sbjct: 642 catcaaatgatgt 654