Miyakogusa Predicted Gene

Lj3g3v3026740.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v3026740.1 Non Chatacterized Hit- tr|C5XVQ2|C5XVQ2_SORBI
Putative uncharacterized protein Sb04g023870
OS=Sorghu,38.12,2e-19,NAP-like,NULL; NAP,Nucleosome assembly protein
(NAP); SUBFAMILY NOT NAMED,NULL; TESTIS-SPECIFIC Y-EN,gene.g50169.t1.1
         (510 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC57374 weakly similar to UniRef100_Q9M9V0 Cluster: F6A...   928   0.0  
gnl|LJGI|TC60758 similar to UniRef100_Q9M9V0 Cluster: F6A14.10 p...   190   6e-48

>gnl|LJGI|TC57374 weakly similar to UniRef100_Q9M9V0 Cluster: F6A14.10 protein; n=1;
           Arabidopsis thaliana|Rep: F6A14.10 protein - Arabidopsis
           thaliana (Mouse-ear cress), partial (29%)
          Length = 1224

 Score =  928 bits (468), Expect = 0.0
 Identities = 468/468 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagaagttggaggagatggaagataagatcaatctgatccatatgatggctttccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 atggagaagttggaggagatggaagataagatcaatctgatccatatgatggctttccaa 203

                                                                       
Query: 61  gtcgatgactacaaggagagactaaagtcggcgtatcaggagcggagcaagattatcgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gtcgatgactacaaggagagactaaagtcggcgtatcaggagcggagcaagattatcgat 263

                                                                       
Query: 121 tctatccccggtttctggtttactgttgttcttctcaagcatcctgcctaccgtcaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctatccccggtttctggtttactgttgttcttctcaagcatcctgcctaccgtcaactt 323

                                                                       
Query: 181 ttcaaccaggaagatcataagatatttcagtattttacttctcttgaggttgaagatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcaaccaggaagatcataagatatttcagtattttacttctcttgaggttgaagatgat 383

                                                                       
Query: 241 atggatgtcaactcaagctactcaatcacctttaatttcaaacccaatccatattttgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atggatgtcaactcaagctactcaatcacctttaatttcaaacccaatccatattttgag 443

                                                                       
Query: 301 aatacaaagcttcaaaagactttaaccttccttcaagaaggaactacaaaaattactgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatacaaagcttcaaaagactttaaccttccttcaagaaggaactacaaaaattactgcc 503

                                                                       
Query: 361 acaccaattaaatggaagcagaacaaccaagttcctgctgatttcggtttcttttcttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acaccaattaaatggaagcagaacaaccaagttcctgctgatttcggtttcttttcttgg 563

                                                           
Query: 421 tttactatgactgagcagaaagatgatgtgcatcacattcatgatgag 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttactatgactgagcagaaagatgatgtgcatcacattcatgatgag 611


>gnl|LJGI|TC60758 similar to UniRef100_Q9M9V0 Cluster: F6A14.10 protein; n=1;
           Arabidopsis thaliana|Rep: F6A14.10 protein - Arabidopsis
           thaliana (Mouse-ear cress), partial (85%)
          Length = 1079

 Score =  190 bits (96), Expect = 6e-48
 Identities = 165/188 (87%)
 Strand = Plus / Plus

                                                                       
Query: 190 gaagatcataagatatttcagtattttacttctcttgaggttgaagatgatatggatgtc 249
           |||||||| ||||||||| ||||||| ||||||||||||||||||||| ||| |||||||
Sbjct: 370 gaagatcagaagatatttaagtatttgacttctcttgaggttgaagattataaggatgtc 429

                                                                       
Query: 250 aactcaagctactcaatcacctttaatttcaaacccaatccatattttgagaatacaaag 309
           || ||| |||||||||||||||| ||||||||||||||||||||||||||| || | |||
Sbjct: 430 aagtcaggctactcaatcaccttcaatttcaaacccaatccatattttgaggatgctaag 489

                                                                       
Query: 310 cttcaaaagactttaaccttccttcaagaaggaactacaaaaattactgccacaccaatt 369
           |||   |||||||| ||||||||| |||||||||  |||||  ||||||| ||||| |||
Sbjct: 490 cttgttaagacttttaccttccttgaagaaggaataacaaaggttactgctacacccatt 549

                   
Query: 370 aaatggaa 377
           || |||||
Sbjct: 550 aagtggaa 557



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 393 tcctgctgatttcggtttcttttcttggtttactatgactgagcagaaagatgatgtgca 452
           ||||| |||| || |||||||| |||||||| ||   |||||||||||||||||| || |
Sbjct: 615 tcctgttgatgtcagtttctttacttggtttgctcacactgagcagaaagatgatatgga 674

                       
Query: 453 tcacattcatga 464
           | ||||||||||
Sbjct: 675 tgacattcatga 686