Miyakogusa Predicted Gene
- Lj3g3v3006550.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3006550.1 tr|F2D013|F2D013_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,57.14,0.018,RNA-binding
domain, RBD,NULL; CCCH zinc finger,NULL; U2AUXFACTOR,U2 auxiliary
factor small subunit; ,NODE_63306_length_883_cov_103.347679.path2.1
(849 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC71172 similar to UniRef100_Q99L29 Cluster: cDNA seque... 1130 0.0
gnl|LJGI|BW613015 similar to UniRef100_A7PPK3 Cluster: Chromosom... 773 0.0
gnl|LJGI|TC73850 homologue to UniRef100_A7PPK3 Cluster: Chromoso... 204 6e-52
gnl|LJGI|TC82268 homologue to UniRef100_A7PPK3 Cluster: Chromoso... 174 6e-43
gnl|LJGI|TC72712 similar to UniRef100_A7QPI3 Cluster: Chromosome... 153 2e-36
gnl|LJGI|TC61700 similar to UniRef100_A7PPK3 Cluster: Chromosome... 141 8e-33
gnl|LJGI|TC82561 similar to UniRef100_Q99L29 Cluster: cDNA seque... 103 2e-21
>gnl|LJGI|TC71172 similar to UniRef100_Q99L29 Cluster: cDNA sequence BC003883; n=1;
Mus musculus|Rep: cDNA sequence BC003883 - Mus musculus
(Mouse), partial (60%)
Length = 661
Score = 1130 bits (570), Expect = 0.0
Identities = 584/591 (98%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcgatcttcggcaccgagaaagacagagtcaactgccctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 atggcggagcacttggcatcgatcttcggcaccgagaaagacagagtcaactgccctttc 130
Query: 61 tacttcaagatcggcgcctgccgccacggcgaccgctgctcgcgcctccacacaaaacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tacttcaagatcggcgcctgccgccacggcgaccgctgctcgcgcctccacacaaaacca 190
Query: 121 agcatcagcccaacgctgctactctccaacatgtaccagcgtccggacatcgtcaccccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 agcatcagcccaacgctgctactctccaacatgtaccagcgtccggacatcgtcaccccc 250
Query: 181 ggcgtcgacgcccagggtcagcccatcgacccccgcaagatccaaacccacttcgatgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggcgtcgacgcccagggtcagcccatcgacccccgcaagatccaaacccacttcgatgac 310
Query: 241 ttctaccaagacctcttcgatgaactctccaagtacggtcgacttcaaacgctcaacgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttctaccaagacctcttcgatgaactctccaagtacggtcgacttcaaacgctcaacgtt 370
Query: 301 tgtgataatctcgctgatcacatggttggtaatgtttatgctcagttcagggaggaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgtgataatctcgctgatcacatggttggtaatgtttatgctcagttcagggaggaagaa 430
Query: 361 cacgctgctgaggcgcttaagaatctcactggaagattttatgctggaaacccgattatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cacgctgctgaggcgcttaagaatctcactggaagattttatgctggaaacccgattatt 490
Query: 421 gtggacttttctcctgtaacagacttccgtgaggctacttgcaggcagtatgaggaggat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtggacttttctcctgtaacagacttccgtgaggctacttgcaggcagtatgaggaggat 550
Query: 481 tcttgtaaccggggaggctattgcaactttatgcacttgnnnnnnnttagcagggaattg 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 551 tcttgtaaccggggaggctattgcaactttatgcacttgaaaaaaattagcagggaattg 610
Query: 541 aggcgtgagttgtttgggatggacaaccgtggcaggcatggccgaagcagg 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aggcgtgagttgtttgggatggacaaccgtggcaggcatggccgaagcagg 661
>gnl|LJGI|BW613015 similar to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 487
Score = 773 bits (390), Expect = 0.0
Identities = 390/390 (100%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcgatcttcggcaccgagaaagacagagtcaactgccctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 atggcggagcacttggcatcgatcttcggcaccgagaaagacagagtcaactgccctttc 157
Query: 61 tacttcaagatcggcgcctgccgccacggcgaccgctgctcgcgcctccacacaaaacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tacttcaagatcggcgcctgccgccacggcgaccgctgctcgcgcctccacacaaaacca 217
Query: 121 agcatcagcccaacgctgctactctccaacatgtaccagcgtccggacatcgtcaccccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 agcatcagcccaacgctgctactctccaacatgtaccagcgtccggacatcgtcaccccc 277
Query: 181 ggcgtcgacgcccagggtcagcccatcgacccccgcaagatccaaacccacttcgatgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggcgtcgacgcccagggtcagcccatcgacccccgcaagatccaaacccacttcgatgac 337
Query: 241 ttctaccaagacctcttcgatgaactctccaagtacggtcgacttcaaacgctcaacgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttctaccaagacctcttcgatgaactctccaagtacggtcgacttcaaacgctcaacgtt 397
Query: 301 tgtgataatctcgctgatcacatggttggtaatgtttatgctcagttcagggaggaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgtgataatctcgctgatcacatggttggtaatgtttatgctcagttcagggaggaagaa 457
Query: 361 cacgctgctgaggcgcttaagaatctcact 390
||||||||||||||||||||||||||||||
Sbjct: 458 cacgctgctgaggcgcttaagaatctcact 487
>gnl|LJGI|TC73850 homologue to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 526
Score = 204 bits (103), Expect = 6e-52
Identities = 331/407 (81%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcgatcttcggcaccgagaaagacagagtcaactgccctttc 60
|||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| |||
Sbjct: 95 atggcggagcacttggcatcaatcttcggcacagagaaagacagagtgaattgcccattc 154
Query: 61 tacttcaagatcggcgcctgccgccacggcgaccgctgctcgcgcctccacacaaaacca 120
|||||||||||||| || ||| | || ||||| |||||||| | |||||||| |||||
Sbjct: 155 tacttcaagatcggagcatgcagacatggcgatcgctgctccaggctccacaccaaaccc 214
Query: 121 agcatcagcccaacgctgctactctccaacatgtaccagcgtccggacatcgtcaccccc 180
||||||||||| || | || ||||||||||||||||| || || ||||| |||| |||
Sbjct: 215 agcatcagccccaccattctcctctccaacatgtaccaacgccctgacatgatcactccc 274
Query: 181 ggcgtcgacgcccagggtcagcccatcgacccccgcaagatccaaacccacttcgatgac 240
|||||||||| || || || ||||||||||| |||| |||||| |||||| || ||
Sbjct: 275 ggcgtcgacgttcacggccaacccatcgaccctcgcaggatccaggaccactttgaagaa 334
Query: 241 ttctaccaagacctcttcgatgaactctccaagtacggtcgacttcaaacgctcaacgtt 300
||||| | || | || || || | || ||||| ||| || ||| ||||| ||
Sbjct: 335 ttctatgaggatttgtttgaagagttgtctaagtatggtgatattgaaagcctcaatgtg 394
Query: 301 tgtgataatctcgctgatcacatggttggtaatgtttatgctcagttcagggaggaagaa 360
|||||||| |||||||||||||||||||||||||| || | |||||| || |||||||||
Sbjct: 395 tgtgataacctcgctgatcacatggttggtaatgtgtacgttcagtttagagaggaagaa 454
Query: 361 cacgctgctgaggcgcttaagaatctcactggaagattttatgctgg 407
|| |||| | | || ||| ||||||||||||||| |||||||||||
Sbjct: 455 catgctggtaatgctgttaggaatctcactggaaggttttatgctgg 501
>gnl|LJGI|TC82268 homologue to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 451
Score = 174 bits (88), Expect = 6e-43
Identities = 190/224 (84%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcgatcttcggcaccgagaaagacagagtcaactgccctttc 60
|||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| |||
Sbjct: 25 atggcggagcacttggcatcaatcttcggcacagagaaagacagagtgaattgcccattc 84
Query: 61 tacttcaagatcggcgcctgccgccacggcgaccgctgctcgcgcctccacacaaaacca 120
|||||||||||||| || ||| | || ||||| |||||||| | |||||||| |||||
Sbjct: 85 tacttcaagatcggagcatgcagacatggcgatcgctgctccaggctccacaccaaaccc 144
Query: 121 agcatcagcccaacgctgctactctccaacatgtaccagcgtccggacatcgtcaccccc 180
||||||||||| || | || ||||||||||||||||| || || ||||| |||| |||
Sbjct: 145 agcatcagccccaccattctcctctccaacatgtaccaacgccctgacatgatcactccc 204
Query: 181 ggcgtcgacgcccagggtcagcccatcgacccccgcaagatcca 224
|||||||||| || || || ||||||||||| |||| ||||||
Sbjct: 205 ggcgtcgacgttcacggccaacccatcgaccctcgcaggatcca 248
Score = 61.9 bits (31), Expect = 6e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 325 gttggtaatgtttatgctcagttcagggaggaagaacacgctgctgaggcgcttaagaat 384
||||||||||| || | |||||| || ||||||||||| |||| | | || ||| ||||
Sbjct: 322 gttggtaatgtgtacgttcagtttagagaggaagaacatgctggtaatgctgttaggaat 381
Query: 385 ctcactggaagattttatgctgg 407
||||||||||| |||||||||||
Sbjct: 382 ctcactggaaggttttatgctgg 404
>gnl|LJGI|TC72712 similar to UniRef100_A7QPI3 Cluster: Chromosome chr18 scaffold_137,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_137, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (83%)
Length = 1286
Score = 153 bits (77), Expect = 2e-36
Identities = 176/209 (84%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcgatcttcggcaccgagaaagacagagtcaactgccctttc 60
|||||||||||| ||||||| || |||||||||||||| ||| | || |||||||| |||
Sbjct: 131 atggcggagcacctggcatcaatattcggcaccgagaaggaccgcgttaactgccccttc 190
Query: 61 tacttcaagatcggcgcctgccgccacggcgaccgctgctcgcgcctccacacaaaacca 120
||||||||||||||||||||| | ||||||||||||||||| |||||||||| ||
Sbjct: 191 tacttcaagatcggcgcctgcagacacggcgaccgctgctctcgcctccacaaccgcccc 250
Query: 121 agcatcagcccaacgctgctactctccaacatgtaccagcgtccggacatcgtcaccccc 180
|||||| ||| || || || ||| |||||||||||||| | || ||||| ||||||||
Sbjct: 251 agcatctcccccaccctcctcctcgccaacatgtaccagagacccgacatgatcaccccc 310
Query: 181 ggcgtcgacgcccagggtcagcccatcga 209
||||||||| | ||||| ||||| |||||
Sbjct: 311 ggcgtcgacccacagggccagcctatcga 339
Score = 54.0 bits (27), Expect = 1e-06
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 445 ttccgtgaggctacttgcaggcagtatgaggaggattcttgtaaccggggaggctattgc 504
||||||||||| ||||| ||||||||||||||| || |||||||| || || || |||
Sbjct: 575 ttccgtgaggcgacttgtaggcagtatgaggagaatagctgtaaccgcggtggttactgc 634
Query: 505 aactttatgca 515
||||| |||||
Sbjct: 635 aacttcatgca 645
>gnl|LJGI|TC61700 similar to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (74%)
Length = 1346
Score = 141 bits (71), Expect = 8e-33
Identities = 137/159 (86%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcgatcttcggcaccgagaaagacagagtcaactgccctttc 60
||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 146 atggcggagcacttggcatcgatcttcggaacagagaaagacagagtgaactgcccattc 205
Query: 61 tacttcaagatcggcgcctgccgccacggcgaccgctgctcgcgcctccacacaaaacca 120
|||||||||||||| |||||| | ||||||||||| || || ||||| ||||| || ||
Sbjct: 206 tacttcaagatcggagcctgcagacacggcgaccgttgttctcgccttcacaccaagcct 265
Query: 121 agcatcagcccaacgctgctactctccaacatgtaccag 159
| |||| ||| || || | ||||||||||||||||||
Sbjct: 266 accatctcccccaccctcgtcctctccaacatgtaccag 304
Score = 75.8 bits (38), Expect = 4e-13
Identities = 143/178 (80%)
Strand = Plus / Plus
Query: 299 tttgtgataatctcgctgatcacatggttggtaatgtttatgctcagttcagggaggaag 358
||||||| ||| | ||||||||||||||||| ||||| |||| ||||| | |||||||
Sbjct: 462 tttgtgacaatttggctgatcacatggttggcaatgtatatgttcagtataaagaggaag 521
Query: 359 aacacgctgctgaggcgcttaagaatctcactggaagattttatgctggaaacccgatta 418
| || |||||| | || || | |||||| ||||||||||||||| | || || || |
Sbjct: 522 atcatgctgctaatgctctgatgaatcttactggaagattttattcaggtcgacccatca 581
Query: 419 ttgtggacttttctcctgtaacagacttccgtgaggctacttgcaggcagtatgagga 476
||| |||||||||||||| || || || || || |||||||| ||||||||||||||
Sbjct: 582 ttgccgacttttctcctgttacggattttcgagaagctacttgtaggcagtatgagga 639
>gnl|LJGI|TC82561 similar to UniRef100_Q99L29 Cluster: cDNA sequence BC003883; n=1;
Mus musculus|Rep: cDNA sequence BC003883 - Mus musculus
(Mouse), partial (30%)
Length = 765
Score = 103 bits (52), Expect = 2e-21
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 451 gaggctacttgcaggcagtatgaggaggattcttgtaaccggggaggctattgcaacttt 510
||||||||||||||||||||||||||| || |||| ||||| || || |||||||||||
Sbjct: 21 gaggctacttgcaggcagtatgaggagaatacttgcaaccgtggtggttattgcaacttc 80
Query: 511 atgcacttgnnnnnnnttagcagggaattgaggcgtgagttgtttggga 559
||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 81 atgcacttgaaaagaattagcagggaattgaggcgccagttgtttggga 129
Score = 89.7 bits (45), Expect = 3e-17
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 760 ccagccagggatggcagtgaagagagacgtgccagaattgagcaatggaacagggagagg 819
|||| ||||||| |||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct: 330 ccagtcagggatcccagtgaggagagacgagccagaattgagcagtggaacagggagagg 389
Query: 820 gaagagcaa 828
|||||||||
Sbjct: 390 gaagagcaa 398