Miyakogusa Predicted Gene

Lj3g3v2994540.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v2994540.1 Non Chatacterized Hit- tr|F1NT61|F1NT61_CHICK
Uncharacterized protein (Fragment) OS=Gallus gallus GN,36.36,0.13,no
description,NULL; HYPOTHETICAL PROTEIN CBG00902,NULL; F-BOX/LEUCINE
RICH REPEAT PROTEIN,NULL,TC72952.path1.1
         (367 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72952 weakly similar to UniRef100_Q9ZW88 Cluster: F-b...   714   0.0  

>gnl|LJGI|TC72952 weakly similar to UniRef100_Q9ZW88 Cluster: F-box/LRR-repeat
           protein At1g67190; n=1; Arabidopsis thaliana|Rep:
           F-box/LRR-repeat protein At1g67190 - Arabidopsis
           thaliana (Mouse-ear cress), partial (29%)
          Length = 483

 Score =  714 bits (360), Expect = 0.0
 Identities = 367/368 (99%), Gaps = 1/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtttgacgacgaggatgaggttgtagatttagaaacaattgccagttgctttccacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32  atgtttgacgacgaggatgaggttgtagatttagaaacaattgccagttgctttccacac 91

                                                                       
Query: 61  ctgaaccattta-tctctgagttatgatgtgagatacggagtggttcactatggtttact 119
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctgaaccatttaatctctgagttatgatgtgagatacggagtggttcactatggtttact 151

                                                                       
Query: 120 aggcgctgcctatctggaaaatgttgttatcttggagcttgggtggaatgtgctcaatga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aggcgctgcctatctggaaaatgttgttatcttggagcttgggtggaatgtgctcaatga 211

                                                                       
Query: 180 tcttttctcccactgggttgaggggctgcttaagcgatgccccaatctcaagaagttggt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tcttttctcccactgggttgaggggctgcttaagcgatgccccaatctcaagaagttggt 271

                                                                       
Query: 240 cattcatggggaggtttccgaggccaagtctgatgaagaatgcaaaatatttgcgaattt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cattcatggggaggtttccgaggccaagtctgatgaagaatgcaaaatatttgcgaattt 331

                                                                       
Query: 300 caccaggtccatgattcagctgatgagaagatacacacatgtagatccacattttaattt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caccaggtccatgattcagctgatgagaagatacacacatgtagatccacattttaattt 391

                   
Query: 360 tgaataga 367
           ||||||||
Sbjct: 392 tgaataga 399