Miyakogusa Predicted Gene

Lj3g3v2948520.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v2948520.1 CUFF.45632.1
         (1912 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77688 similar to UniRef100_Q2HVX8 Cluster: Helix-loop...   729   0.0  
gnl|LJGI|FS352562 similar to UniRef100_Q2HVX8 Cluster: Helix-loo...   159   8e-38

>gnl|LJGI|TC77688 similar to UniRef100_Q2HVX8 Cluster: Helix-loop-helix DNA-binding;
            n=2; Medicago truncatula|Rep: Helix-loop-helix
            DNA-binding - Medicago truncatula (Barrel medic), partial
            (30%)
          Length = 1157

 Score =  729 bits (368), Expect = 0.0
 Identities = 371/372 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1483 ccctctccatcctgcaagcaggttatgtctgatcatgttgcccagggagcattgtttgat 1542
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 13   ccctctccatcctgcaagcaggttatgtctgatcttgttgcccagggagcattgtttgat 72

                                                                        
Query: 1543 tttcctaagatggggactaaaacaggtgctgtggaagcaagttctcttcggtcagggtgt 1602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73   tttcctaagatggggactaaaacaggtgctgtggaagcaagttctcttcggtcagggtgt 132

                                                                        
Query: 1603 agcaagggtgatgctggaaactgttctcaaagtacttccatatatgggtctcaacttagt 1662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133  agcaagggtgatgctggaaactgttctcaaagtacttccatatatgggtctcaacttagt 192

                                                                        
Query: 1663 tcatgggttgacgacagcagcaatgtgaagcgtgaaaatagtgcttcaactggatactct 1722
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193  tcatgggttgacgacagcagcaatgtgaagcgtgaaaatagtgcttcaactggatactct 252

                                                                        
Query: 1723 aagaggccggatgaagcaggcaaaacaaatcgtaaacggcttaaaccaggagagaacccc 1782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253  aagaggccggatgaagcaggcaaaacaaatcgtaaacggcttaaaccaggagagaacccc 312

                                                                        
Query: 1783 aggcctcgacctaaagatcgtcaaatgattcaagatcgtgtgaaagagttgagggaaatt 1842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313  aggcctcgacctaaagatcgtcaaatgattcaagatcgtgtgaaagagttgagggaaatt 372

                        
Query: 1843 gtgcctaatgga 1854
            ||||||||||||
Sbjct: 373  gtgcctaatgga 384


>gnl|LJGI|FS352562 similar to UniRef100_Q2HVX8 Cluster: Helix-loop-helix DNA-binding;
            n=2; Medicago truncatula|Rep: Helix-loop-helix
            DNA-binding - Medicago truncatula (Barrel medic), partial
            (25%)
          Length = 751

 Score =  159 bits (80), Expect = 8e-38
 Identities = 152/176 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1685 atgtgaagcgtgaaaatagtgcttcaactggatactctaagaggccggatgaagcaggca 1744
            |||||||| |||||||||||| ||||||||||||||| |||  | ||   ||||| || |
Sbjct: 388  atgtgaagtgtgaaaatagtgtttcaactggatactcgaagcagtcgcgcgaagctggta 329

                                                                        
Query: 1745 aaacaaatcgtaaacggcttaaaccaggagagaaccccaggcctcgacctaaagatcgtc 1804
            || ||||||||||| ||||||||| ||||||||| |||||||||||||| |||||||| |
Sbjct: 328  aatcaaatcgtaaaaggcttaaactaggagagaatcccaggcctcgaccaaaagatcgcc 269

                                                                    
Query: 1805 aaatgattcaagatcgtgtgaaagagttgagggaaattgtgcctaatggagcaaaa 1860
            |||||||||||||||||||||||||| |  | ||| ||||||| ||||||| ||||
Sbjct: 268  aaatgattcaagatcgtgtgaaagagctacgagaacttgtgccaaatggagaaaaa 213