Miyakogusa Predicted Gene
- Lj3g3v2903000.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2903000.1 tr|G7JDG8|G7JDG8_MEDTR Septum-promoting
GTP-binding protein OS=Medicago truncatula GN=MTR_4g047870
P,79.43,0,Rab subfamily of small GTPases,Small GTPase superfamily, Rab
type; P-loop containing nucleoside trip,CUFF.44925.1
(846 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69384 similar to UniRef100_A7PXH0 Cluster: Chromosome... 1677 0.0
gnl|LJGI|TC77421 weakly similar to UniRef100_A7PXH0 Cluster: Chr... 98 1e-19
gnl|LJGI|TC71869 similar to UniRef100_A7P229 Cluster: Chromosome... 98 1e-19
gnl|LJGI|BP056028 similar to UniRef100_A7NZZ4 Cluster: Chromosom... 88 1e-16
>gnl|LJGI|TC69384 similar to UniRef100_A7PXH0 Cluster: Chromosome chr12 scaffold_36,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_36, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (73%)
Length = 1473
Score = 1677 bits (846), Expect = 0.0
Identities = 846/846 (100%)
Strand = Plus / Plus
Query: 1 atgcctcagttatgccgggaagttggtaactccaccacgctccggcggcggtttcaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 atgcctcagttatgccgggaagttggtaactccaccacgctccggcggcggtttcaccac 174
Query: 61 cgtgtctcgttgctccggcgatgtatcctccgtgtcctccaccattttcttgtctgctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 cgtgtctcgttgctccggcgatgtatcctccgtgtcctccaccattttcttgtctgctct 234
Query: 121 gggaggaagcctaccaatgctgcctataggatgctgcatccgcatgtggcattgccttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gggaggaagcctaccaatgctgcctataggatgctgcatccgcatgtggcattgccttct 294
Query: 181 ccgtcgccgccgccggatttttctgctgttgaggctggccttggaggggtgctggttgcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ccgtcgccgccgccggatttttctgctgttgaggctggccttggaggggtgctggttgcg 354
Query: 241 cctccgcctgtgtttcatactcatgattttgaatctgatttggtttccctcaaaatcagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cctccgcctgtgtttcatactcatgattttgaatctgatttggtttccctcaaaatcagc 414
Query: 301 ttgttgggtgactgccaaatcggaaaaaccagctttttggtgaagtatgttggggatgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttgttgggtgactgccaaatcggaaaaaccagctttttggtgaagtatgttggggatgaa 474
Query: 361 aaagagcagggagaattgcagaggaaagggctaaatcagatggacaaaactttggttgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aaagagcagggagaattgcagaggaaagggctaaatcagatggacaaaactttggttgtg 534
Query: 421 gaaggggcacgtatatcctattgtatctgggaagtacaaggggatggaaaaacagatgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gaaggggcacgtatatcctattgtatctgggaagtacaaggggatggaaaaacagatgac 594
Query: 481 caaatgccaattgcttgcaaggactctgtggcaattttgattatgtttgatctaacaagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 caaatgccaattgcttgcaaggactctgtggcaattttgattatgtttgatctaacaagt 654
Query: 541 cgatgcacattaaacagtgttctgggatggtacaaagaagcaaggaaatggaatcagact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cgatgcacattaaacagtgttctgggatggtacaaagaagcaaggaaatggaatcagact 714
Query: 601 gcaattccagtgttgataggaaccaaatttgatgatttcattcagctcccaattgatctg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gcaattccagtgttgataggaaccaaatttgatgatttcattcagctcccaattgatctg 774
Query: 661 caatggaccatcgccagtgaggcaagaacatatgcaaaggccctcaatgccactctattc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 caatggaccatcgccagtgaggcaagaacatatgcaaaggccctcaatgccactctattc 834
Query: 721 ttttccagtgcaacttacaacatcaatgtgaacaagatcttcaagttcatcactgcgaag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ttttccagtgcaacttacaacatcaatgtgaacaagatcttcaagttcatcactgcgaag 894
Query: 781 ctctttgacctgccatggacagtggaaaggaatctaactgttggggagcccatcattgat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 ctctttgacctgccatggacagtggaaaggaatctaactgttggggagcccatcattgat 954
Query: 841 ttctga 846
||||||
Sbjct: 955 ttctga 960
>gnl|LJGI|TC77421 weakly similar to UniRef100_A7PXH0 Cluster: Chromosome chr12
scaffold_36, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_36, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (12%)
Length = 1272
Score = 97.6 bits (49), Expect = 1e-19
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 493 gcttgcaaggactctgtggcaattttgattatgtttgatctaacaagtcgatgcacatta 552
||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 729 gcttgcaaggattctgtggcaattttgattatgtttgatctaacaagtcaacgcacatta 788
Query: 553 a 553
|
Sbjct: 789 a 789
Score = 93.7 bits (47), Expect = 2e-18
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 601 gcaattccagtgttgataggaaccaaatttgatgatttcattcagctcccaa-ttgatct 659
||||||||||| |||| | ||| |||||||||||||||||||||| |||||| ||||| |
Sbjct: 615 gcaattccagtcttgacaagaatcaaatttgatgatttcattcagatcccaatttgattt 674
Query: 660 gcaatggaccatcgccagtgagg 682
|||||||| ||||||||||||||
Sbjct: 675 gcaatggatcatcgccagtgagg 697
>gnl|LJGI|TC71869 similar to UniRef100_A7P229 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 730
Score = 97.6 bits (49), Expect = 1e-19
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 465 tggaaaaacagatgaccaaatgccaattgcttgcaaggactctgtggcaattttgattat 524
||||||| |||| ||||| || ||||| |||||| ||| |||| ||||||||||||||
Sbjct: 36 tggaaaatcagaagaccagattccaatggcttgccagggtgctgtagcaattttgattat 95
Query: 525 gtttgatctaacaagtcgatgcacattaaacag 557
|||||||||||||||| ||||||||||||||||
Sbjct: 96 gtttgatctaacaagttgatgcacattaaacag 128
>gnl|LJGI|BP056028 similar to UniRef100_A7NZZ4 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 537
Score = 87.7 bits (44), Expect = 1e-16
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 506 ctgtggcaattttgattatgtttgatctaacaagtcgatgcacattaaacag 557
|||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 532 ctgtagcaattttgattatgtttgatctaacaagttgatgcacattaaacag 481