Miyakogusa Predicted Gene
- Lj3g3v2838550.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2838550.1 tr|B6SXA5|B6SXA5_MAIZE RING-H2 finger protein
ATL2K OS=Zea mays PE=2 SV=1,34.82,5e-19,ZF_RING_2,Zinc finger,
RING-type; Ring finger,Zinc finger, RING-type; RING FINGER PROTEIN
6/12/38,NU,CUFF.44765.1
(744 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57296 similar to UniRef100_A7PJE0 Cluster: Chromosome... 1467 0.0
gnl|LJGI|BW617533 weakly similar to UniRef100_A1L1E2 Cluster: LO... 729 0.0
>gnl|LJGI|TC57296 similar to UniRef100_A7PJE0 Cluster: Chromosome chr12 scaffold_18,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_18, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (24%)
Length = 1017
Score = 1467 bits (740), Expect = 0.0
Identities = 743/744 (99%)
Strand = Plus / Plus
Query: 1 atgagtagtaatttcaatgaggatgatgatcgagactacaacccatttgttaacttccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 atgagtagtaatttcaatgaggatgatgatcgagactacaacccatttgttaacttccat 109
Query: 61 aaccgattctcatcagaccacaacaacttcaacaagaggatcttgctggttgccatagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 aaccgattctcatcagaccacaacaacttcaacaagaggatcttgctggttgccatagtt 169
Query: 121 tcattatcagcggtgttagctctggttctggcacttcacctctacgccaggttcgttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tcattatcagcggtgttagctctggttctggcacttcacctctacgccaggttcgttctc 229
Query: 181 cgtcgccaagctcgccgtagagccgccattcaccaactcaccctcaccgtcgccgcccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 cgtcgccaagctcgccgtagagccgccattcaccaactcaccctcaccgtcgccgcccac 289
Query: 241 aacaccacccaattcgccaacgaaggtctcgacgctaccctcatcaacgcgcttcccact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aacaccacccaattcgccaacgaaggtctcgacgctaccctcatcaacgcgcttcccact 349
Query: 301 ttcatcttaaacaaatcgcaagaagatgaaagtgaagaatgcgcggtgtgcttgagcgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttcatcttaaacaaatcgcaagaagatgaaagtgaagaatgcgcggtgtgcttgagcgct 409
Query: 361 ttggaacatgaagaaaaggtgaggctgcttccgaattgcaagcatactttccacgtgagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ttggaacatgaagaaaaggtgaggctgcttccgaattgcaagcatactttccacgtgagt 469
Query: 421 tgcatcgacacgtggctgacttcccactccacgtgtcctgtttgtcgaaccaaagtcgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tgcatcgacacgtggctgacttcccactccacgtgtcctgtttgtcgaaccaaagtcgaa 529
Query: 481 cccactaacacgggacccaagctcgagctgcagccgcgagagggtcccgtgttgataggt 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cccactaacacgggacccaacctcgagctgcagccgcgagagggtcccgtgttgataggt 589
Query: 541 ccgcatgatgcaacagcaccctcagctcctgttttgtttgagccaggagctgaaggcacg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ccgcatgatgcaacagcaccctcagctcctgttttgtttgagccaggagctgaaggcacg 649
Query: 601 tctgatagttcgcctaaaattcatggttcaaatccttcgaggttgagctcgttccggaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tctgatagttcgcctaaaattcatggttcaaatccttcgaggttgagctcgttccggaga 709
Query: 661 atgcttagtagggagagatcgttaaggagaatccaaccttctagttgtgatgatattgtt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atgcttagtagggagagatcgttaaggagaatccaaccttctagttgtgatgatattgtt 769
Query: 721 gatcatgatttagagaggcagtga 744
||||||||||||||||||||||||
Sbjct: 770 gatcatgatttagagaggcagtga 793
>gnl|LJGI|BW617533 weakly similar to UniRef100_A1L1E2 Cluster: LOC100036726 protein;
n=1; Xenopus tropicalis|Rep: LOC100036726 protein -
Xenopus tropicalis (Western clawed frog) (Silurana
tropicalis), partial (3%)
Length = 476
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Plus
Query: 1 atgagtagtaatttcaatgaggatgatgatcgagactacaacccatttgttaacttccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 atgagtagtaatttcaatgaggatgatgatcgagactacaacccatttgttaacttccat 168
Query: 61 aaccgattctcatcagaccacaacaacttcaacaagaggatcttgctggttgccatagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 aaccgattctcatcagaccacaacaacttcaacaagaggatcttgctggttgccatagtt 228
Query: 121 tcattatcagcggtgttagctctggttctggcacttcacctctacgccaggttcgttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tcattatcagcggtgttagctctggttctggcacttcacctctacgccaggttcgttctc 288
Query: 181 cgtcgccaagctcgccgtagagccgccattcaccaactcaccctcaccgtcgccgcccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cgtcgccaagctcgccgtagagccgccattcaccaactcaccctcaccgtcgccgcccac 348
Query: 241 aacaccacccaattcgccaacgaaggtctcgacgctaccctcatcaacgcgcttcccact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aacaccacccaattcgccaacgaaggtctcgacgctaccctcatcaacgcgcttcccact 408
Query: 301 ttcatcttaaacaaatcgcaagaagatgaaagtgaagaatgcgcggtgtgcttgagcgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttcatcttaaacaaatcgcaagaagatgaaagtgaagaatgcgcggtgtgcttgagcgct 468
Query: 361 ttggaaca 368
||||||||
Sbjct: 469 ttggaaca 476