Miyakogusa Predicted Gene
- Lj3g3v2838440.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2838440.1 Non Chatacterized Hit- tr|F6H5F6|F6H5F6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,36.97,0.000000000000003,seg,NULL,CUFF.44761.1
(590 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC71503 similar to UniRef100_A7PJA1 Cluster: Chromosome... 985 0.0
gnl|LJGI|TC67819 similar to UniRef100_A7PJA1 Cluster: Chromosome... 985 0.0
gnl|LJGI|BW620240 weakly similar to UniRef100_O88703 Cluster: Po... 446 e-125
>gnl|LJGI|TC71503 similar to UniRef100_A7PJA1 Cluster: Chromosome chr12 scaffold_18,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_18, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (39%)
Length = 794
Score = 985 bits (497), Expect = 0.0
Identities = 497/497 (100%)
Strand = Plus / Plus
Query: 94 tccaagaacccttctcttgctccttcttcttcatacgcttccgcttcctattctgctgtt 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tccaagaacccttctcttgctccttcttcttcatacgcttccgcttcctattctgctgtt 268
Query: 154 tccgcacccaacaaaccccatggccggatcctcgtcctgacccgacccactcccaaaccc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tccgcacccaacaaaccccatggccggatcctcgtcctgacccgacccactcccaaaccc 328
Query: 214 gtcacgcaccccaccacgcctgcaccgccacagccacaaccaccttcccaacccagcccg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtcacgcaccccaccacgcctgcaccgccacagccacaaccaccttcccaacccagcccg 388
Query: 274 atccaacgtgccccggatcacccccgccccgaaccgggatcggacgcgatctcgcttcgc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atccaacgtgccccggatcacccccgccccgaaccgggatcggacgcgatctcgcttcgc 448
Query: 334 ccgttgggtcgaaccggaagcggcccatcacttgctgtaccgaaccaggagaaggatagg 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccgttgggtcgaaccggaagcggcccatcacttgctgtaccgaaccaggagaaggatagg 508
Query: 394 gagttgccctctccgcggcagcctctgaagccgaacaagttcgtgccgccgcaccttcgg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gagttgccctctccgcggcagcctctgaagccgaacaagttcgtgccgccgcaccttcgg 568
Query: 454 cccgggtatgtgccgaaggaagacccgggtcggttcggggaaaacgggcgacccaagtcg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cccgggtatgtgccgaaggaagacccgggtcggttcggggaaaacgggcgacccaagtcg 628
Query: 514 ggtgggctcgagaggatgaggaggggtggcgggtcggatgtgggtcgtggggttcgacca 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ggtgggctcgagaggatgaggaggggtggcgggtcggatgtgggtcgtggggttcgacca 688
Query: 574 agttcgagtggatgatg 590
|||||||||||||||||
Sbjct: 689 agttcgagtggatgatg 705
Score = 119 bits (60), Expect = 2e-26
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 atggcaaaaaacaacaagtatgcttccattaacttcaaccacatctacgagaaatccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 atggcaaaaaacaacaagtatgcttccattaacttcaaccacatctacgagaaatccata 175
>gnl|LJGI|TC67819 similar to UniRef100_A7PJA1 Cluster: Chromosome chr12 scaffold_18,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_18, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (33%)
Length = 1177
Score = 985 bits (497), Expect = 0.0
Identities = 497/497 (100%)
Strand = Plus / Plus
Query: 94 tccaagaacccttctcttgctccttcttcttcatacgcttccgcttcctattctgctgtt 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tccaagaacccttctcttgctccttcttcttcatacgcttccgcttcctattctgctgtt 251
Query: 154 tccgcacccaacaaaccccatggccggatcctcgtcctgacccgacccactcccaaaccc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tccgcacccaacaaaccccatggccggatcctcgtcctgacccgacccactcccaaaccc 311
Query: 214 gtcacgcaccccaccacgcctgcaccgccacagccacaaccaccttcccaacccagcccg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtcacgcaccccaccacgcctgcaccgccacagccacaaccaccttcccaacccagcccg 371
Query: 274 atccaacgtgccccggatcacccccgccccgaaccgggatcggacgcgatctcgcttcgc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atccaacgtgccccggatcacccccgccccgaaccgggatcggacgcgatctcgcttcgc 431
Query: 334 ccgttgggtcgaaccggaagcggcccatcacttgctgtaccgaaccaggagaaggatagg 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ccgttgggtcgaaccggaagcggcccatcacttgctgtaccgaaccaggagaaggatagg 491
Query: 394 gagttgccctctccgcggcagcctctgaagccgaacaagttcgtgccgccgcaccttcgg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gagttgccctctccgcggcagcctctgaagccgaacaagttcgtgccgccgcaccttcgg 551
Query: 454 cccgggtatgtgccgaaggaagacccgggtcggttcggggaaaacgggcgacccaagtcg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cccgggtatgtgccgaaggaagacccgggtcggttcggggaaaacgggcgacccaagtcg 611
Query: 514 ggtgggctcgagaggatgaggaggggtggcgggtcggatgtgggtcgtggggttcgacca 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggtgggctcgagaggatgaggaggggtggcgggtcggatgtgggtcgtggggttcgacca 671
Query: 574 agttcgagtggatgatg 590
|||||||||||||||||
Sbjct: 672 agttcgagtggatgatg 688
Score = 119 bits (60), Expect = 2e-26
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 atggcaaaaaacaacaagtatgcttccattaacttcaaccacatctacgagaaatccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 atggcaaaaaacaacaagtatgcttccattaacttcaaccacatctacgagaaatccata 158
>gnl|LJGI|BW620240 weakly similar to UniRef100_O88703 Cluster: Potassium/sodium
hyperpolarization-activated cyclic nucleotide-gated
channel 2; n=1; Mus musculus|Rep: Potassium/sodium
hyperpolarization-activated cyclic nucleotide-gated
channel 2 - Mus musculus (Mouse), partial (4%)
Length = 486
Score = 446 bits (225), Expect = e-125
Identities = 225/225 (100%)
Strand = Plus / Plus
Query: 94 tccaagaacccttctcttgctccttcttcttcatacgcttccgcttcctattctgctgtt 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tccaagaacccttctcttgctccttcttcttcatacgcttccgcttcctattctgctgtt 321
Query: 154 tccgcacccaacaaaccccatggccggatcctcgtcctgacccgacccactcccaaaccc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tccgcacccaacaaaccccatggccggatcctcgtcctgacccgacccactcccaaaccc 381
Query: 214 gtcacgcaccccaccacgcctgcaccgccacagccacaaccaccttcccaacccagcccg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtcacgcaccccaccacgcctgcaccgccacagccacaaccaccttcccaacccagcccg 441
Query: 274 atccaacgtgccccggatcacccccgccccgaaccgggatcggac 318
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atccaacgtgccccggatcacccccgccccgaaccgggatcggac 486
Score = 119 bits (60), Expect = 2e-26
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 atggcaaaaaacaacaagtatgcttccattaacttcaaccacatctacgagaaatccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 atggcaaaaaacaacaagtatgcttccattaacttcaaccacatctacgagaaatccata 228