Miyakogusa Predicted Gene

Lj3g3v2812210.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v2812210.1 tr|Q6H805|Q6H805_ORYSJ Os02g0182100 protein
OS=Oryza sativa subsp. japonica GN=OJ1297_C09.26 PE=2
SV,35.37,2e-17,no description,Homeodomain-like;
Homeodomain-like,Homeodomain-like; Myb_DNA-binding,SANT/Myb
domain;,CUFF.44739.1
         (1053 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP039507 similar to UniRef100_A7PJ92 Cluster: Chromosom...   325   3e-88
gnl|LJGI|BP051913 similar to UniRef100_A7PJ92 Cluster: Chromosom...   135   6e-31

>gnl|LJGI|BP039507 similar to UniRef100_A7PJ92 Cluster: Chromosome chr12 scaffold_18,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr12 scaffold_18, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (13%)
          Length = 518

 Score =  325 bits (164), Expect = 3e-88
 Identities = 164/164 (100%)
 Strand = Plus / Minus

                                                                        
Query: 890  tcgactttcatccgtcaaaggaaagcattgatgcagcccttggtgatgttttatctaaac 949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518  tcgactttcatccgtcaaaggaaagcattgatgcagcccttggtgatgttttatctaaac 459

                                                                        
Query: 950  catggttgccactgcctcttggccttaaagctccagcacttgatggtgtcattggtgaat 1009
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458  catggttgccactgcctcttggccttaaagctccagcacttgatggtgtcattggtgaat 399

                                                        
Query: 1010 tgcagagacaaggagttcccagacttccaccctcttgtgcttga 1053
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398  tgcagagacaaggagttcccagacttccaccctcttgtgcttga 355


>gnl|LJGI|BP051913 similar to UniRef100_A7PJ92 Cluster: Chromosome chr12 scaffold_18,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr12 scaffold_18, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (12%)
          Length = 519

 Score =  135 bits (68), Expect = 6e-31
 Identities = 134/156 (85%)
 Strand = Plus / Minus

                                                                        
Query: 893  actttcatccgtcaaaggaaagcattgatgcagcccttggtgatgttttatctaaaccat 952
            |||| |||||||||||||| ||||| ||||||||  |||| ||||||||||| |||||||
Sbjct: 442  acttacatccgtcaaaggagagcatagatgcagcaattggagatgttttatcaaaaccat 383

                                                                        
Query: 953  ggttgccactgcctcttggccttaaagctccagcacttgatggtgtcattggtgaattgc 1012
            || |||| || || ||||| || || |||||||| |||||  |||| |||||||||||||
Sbjct: 382  ggctgccgctaccacttggactcaaggctccagcgcttgacagtgtgattggtgaattgc 323

                                                
Query: 1013 agagacaaggagttcccagacttccaccctcttgtg 1048
            |||||||||||||| |||   |||||||||||||||
Sbjct: 322  agagacaaggagtttccaacattccaccctcttgtg 287