Miyakogusa Predicted Gene

Lj3g3v2735140.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v2735140.2 Non Chatacterized Hit- tr|K3YFL4|K3YFL4_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si013032,67.21,2e-18,Sec1,Sec1-like protein; seg,NULL; PLANT
SEC1,NULL; VESICLE PROTEIN SORTING-ASSOCIATED,Sec1-like
prot,CUFF.44531.2
         (438 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC80561 similar to UniRef100_Q9C5X3 Cluster: SNARE-inte...    54   7e-07

>gnl|LJGI|TC80561 similar to UniRef100_Q9C5X3 Cluster: SNARE-interacting protein
           KEULE; n=1; Arabidopsis thaliana|Rep: SNARE-interacting
           protein KEULE - Arabidopsis thaliana (Mouse-ear cress),
           partial (40%)
          Length = 1091

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                              
Query: 100 cttcgagagcttggacagttggagcaagatcttgttttcggggatgctgga 150
           ||||| || ||||| ||| ||||||||||||||||||| || |||||||||
Sbjct: 72  cttcgggaacttgggcagctggagcaagatcttgtttttggagatgctgga 122