Miyakogusa Predicted Gene

Lj3g3v2721400.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v2721400.1 CUFF.44490.1
         (355 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC82302                                                      283   4e-76
gnl|LJGI|FS353219                                                     281   1e-75

>gnl|LJGI|TC82302 
          Length = 412

 Score =  283 bits (143), Expect = 4e-76
 Identities = 242/278 (87%), Gaps = 9/278 (3%)
 Strand = Plus / Plus

                                                                       
Query: 73  ggaagagacagaggatatttcaccactttgtggaatggggcagtannnnnnnnatctgca 132
           ||||||||||| |||| ||||| |||||||||||||||||| |||        |||||| 
Sbjct: 65  ggaagagacaggggatctttcatcactttgtggaatggggcggtaatttttttatctgcc 124

                                                                       
Query: 133 aaagacaagaagnnnnnnncggctgcatttggagacctattttcattgcactacaaattg 192
           ||||||||| ||       ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 125 aaagacaaggagaaataaacggctgcatttggagacttattttcattgcactaccaattg 184

                                                                       
Query: 193 gtaattaatgaatatagctctatatatacattgattcacatgaaaggcaaaaaggaaaca 252
           |||||    |||||||||||||||    ||||||||||||||||||| ||||||||||||
Sbjct: 185 gtaat----gaatatagctctata----cattgattcacatgaaaggaaaaaaggaaaca 236

                                                                       
Query: 253 atcatgtgtacattgtccttgtatgagagacaaagttattgtctcttagcaatgtttttc 312
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 237 atcacgtgtacattgtccttgtatgagagacaaagttattgtctcttagcaatgcttttc 296

                                                 
Query: 313 cctttcttttgcagctttaatttgtatctgctcagacc 350
           |||||| |||||||||||||||||||||||| ||||||
Sbjct: 297 cctttc-tttgcagctttaatttgtatctgcccagacc 333


>gnl|LJGI|FS353219 
          Length = 345

 Score =  281 bits (142), Expect = 1e-75
 Identities = 252/292 (86%), Gaps = 10/292 (3%)
 Strand = Plus / Minus

                                                                       
Query: 64  aatgatccaggaagagacagaggatatttcaccactttgtggaatggggcagtannnnnn 123
           |||| |||||| |||||||| |||||||||| ||||||||||||| ||||||||      
Sbjct: 345 aatggtccagggagagacaggggatatttcatcactttgtggaatagggcagtaattttt 286

                                                                       
Query: 124 nnatctgcaaaagacaagaagnnnnnnncggctgcatttggagacctattttcattgcac 183
             |||||||||||||||||||       ||||||||||||||||  ||||||||||||||
Sbjct: 285 ttatctgcaaaagacaagaagaaaaaaacggctgcatttggagaattattttcattgcac 226

                                                                       
Query: 184 tacaaattggtaattaatgaatatagctctatatatacattgattcacatgaaaggcaaa 243
           |||||||| ||||| |     | ||||||||||    |||||  |||||||||||||| |
Sbjct: 225 tacaaatttgtaatga-----tgtagctctata----cattggatcacatgaaaggcata 175

                                                                       
Query: 244 aaggaaacaatcatgtgtacattgtccttgtatgagagacaaagttattgtctcttagca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aaggaaacaatcatgtgtacattgtccttgtatgagagacaaagttattgtctcttagca 115

                                                               
Query: 304 atgtttttccctttcttttgcagctttaatttgtatctgctcagaccttgag 355
           ||||||||||||||| |||||||||||||||||||||||| |||||| ||||
Sbjct: 114 atgtttttccctttc-tttgcagctttaatttgtatctgcccagaccctgag 64