Miyakogusa Predicted Gene

Lj3g3v2665440.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v2665440.1 Non Chatacterized Hit- tr|H3GGH2|H3GGH2_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,43.09,2e-18,Ubiquitin homologues,Ubiquitin; seg,NULL;
Ubiquitin-like,NULL; no description,NULL;
UBIQUITIN_2,Ubiq,CUFF.44544.1
         (1380 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81907 similar to UniRef100_A7P2V2 Cluster: Chromosome...  1453   0.0  
gnl|LJGI|DC594778 similar to UniRef100_A7P2V2 Cluster: Chromosom...   464   e-130
gnl|LJGI|TC67211 similar to UniRef100_A7P2V2 Cluster: Chromosome...   369   e-101
gnl|LJGI|TC81210 similar to UniRef100_Q8RXF1 Cluster: Probable s...   274   1e-72
gnl|LJGI|TC78133 similar to UniRef100_A7P2V2 Cluster: Chromosome...   190   2e-47

>gnl|LJGI|TC81907 similar to UniRef100_A7P2V2 Cluster: Chromosome chr1 scaffold_5,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr1 scaffold_5, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (37%)
          Length = 1221

 Score = 1453 bits (733), Expect = 0.0
 Identities = 1010/1100 (91%), Gaps = 33/1100 (3%)
 Strand = Plus / Plus

                                                                        
Query: 296  ggatgtttgccaaaattcgagaaacaactctggctcaggatgatgaaatctcaagaaaca 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    ggatgtttgccaaaattcgagaaacaactctggctcaggatgatgaaatctcaagaaaca 60

                                                                        
Query: 356  ttgttggactagcaaggactcgtcctgatatctttggtactacggaggaagaggtttcca 415
            |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61   ttgttggacttgcaaggactcgtcctgatatctttggtacaacggaggaagaggtttcca 120

                                                                        
Query: 416  atgctgtcaaggcagaaattgagaagaaaaatgatgagcaacctaagcaggttatatggg 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  atgctgtcaaggcagaaattgagaagaaaaatgatgagcaacctaagcaggttatatggg 180

                                                                        
Query: 476  atggtcacacgggaagtattggccgtactgcaaaccaagccatgtcacagagtattggga 535
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 181  atggtcacactggaagtattggccgtactgcaaaccaagccatgtcacagagtattggaa 240

                                                                        
Query: 536  gtgaggatcaaaatgatgcttctaataatgaggccaggaaccttcctggtcctgctgcac 595
            |||||||||||||||||||||||||  |||| | || |||||||||||||||||||||||
Sbjct: 241  gtgaggatcaaaatgatgcttctaactatgaaggcaagaaccttcctggtcctgctgcac 300

                                                                        
Query: 596  ctcctccaagacctggtatgccttcaattcgtcctcttccaccaccacctggactagcat 655
            | |||||||| || || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 301  cccctccaaggcccggcatgccttcaattcgtcctcttccgccaccacctggactagcat 360

                                                                        
Query: 656  tgaatcttcctcgtgttcctcccaa---ctttcagtattctgctcagcatagtgccggcc 712
            |||||||||||||||||||||||||   | ||||||||      ||||| |||| |||||
Sbjct: 361  tgaatcttcctcgtgttcctcccaatgtcgttcagtat------cagcacagtggcggcc 414

                                                                        
Query: 713  ttccaatgcctcctccaagaccaccagtcattcccatgattccatctgtccggcctgctc 772
            |||||||||||||||||||||||||||      | ||||||||||||||||| || ||||
Sbjct: 415  ttccaatgcctcctccaagaccaccag------ctatgattccatctgtccgcccagctc 468

                                                                        
Query: 773  cccctcctccaatgcaaatgacgtctggacagcagtctgttatggctggtcaacaacctc 832
            |||||||||||||||||||||  |||||||||||||||||||||| |||||||| || ||
Sbjct: 469  cccctcctccaatgcaaatgaattctggacagcagtctgttatgggtggtcaaccacatc 528

                                                                        
Query: 833  caatgg---ctccatcaatttctatgaatggccaaccaatgcacatacctccaccacc-- 887
            | |||    |||||||||||||||||||| |||||  ||||||||| |||||||||||  
Sbjct: 529  cgatgatgcctccatcaatttctatgaatagccaaggaatgcacatgcctccaccaccac 588

                                                                        
Query: 888  -tggatctcagttcactcctgttccgaggcct---tataatcctatgtctcatccaccac 943
             ||||||||||||||||||||||||  |||||   | |  ||||||||||||||||||| 
Sbjct: 589  ctggatctcagttcactcctgttccacggcctccttttgttcctatgtctcatccaccat 648

                                                                        
Query: 944  caatgatgcctatgaatatgatgcatccacctcccatgcctcaaggaatgccaccacc-- 1001
            |||||||||||||||      |||||||||| ||| ||||||||||||||||||||||  
Sbjct: 649  caatgatgcctatga------tgcatccaccacccttgcctcaaggaatgccaccacccc 702

                                                                        
Query: 1002 -accgcctgaggaagctcctcccccacttccagaggaaccagaaccaaagaagcaaaagc 1060
             ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 703  caccgcctgaggaagctcttcccccacttccagaggaaccagaaccaaagaggcaaaagc 762

                                                                        
Query: 1061 ttgatgattcttctctgatcccagaagatcaatttctggcccaacatcccggacctgttc 1120
            ||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||
Sbjct: 763  ttgatgattcttctctgattccagaagatcaatttctggctcagcatccgggacctgttc 822

                                                                        
Query: 1121 gcatcagtatatctgttcctaatgttgatgaaggaaatctcaaaggacaagttctggaaa 1180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823  gcatcagtatatctgttcctaatgttgatgaaggaaatctcaaaggacaagttctggaaa 882

                                                                        
Query: 1181 taactgtgcaatcgctgactgaaactgttgccagtctgaaggaaaaaattgccggggaaa 1240
            ||||  ||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 883  taaccttgcaatctctgtctgaaactgttgccagtctgaaggaaaaaattgctggggata 942

                                                                        
Query: 1241 tccagctccctgctaacaagcagaaattgagtggaaagccaggcttttttaaggataatt 1300
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 943  tccagctccctgctaacaagcagaaattgagtggaaagccaggctttcttaaggataatt 1002

                                                                        
Query: 1301 tgtcacttgctcattacaacgtcagtggaggagagacacttgccctgtccttaagagagc 1360
            ||||||||||||||||||| ||||| |||||||| |||||| |||| |||||||||||||
Sbjct: 1003 tgtcacttgctcattacaatgtcagcggaggagaaacacttaccctatccttaagagagc 1062

                                
Query: 1361 gtggtggtagaaagagatga 1380
            ||||||||||||||||||||
Sbjct: 1063 gtggtggtagaaagagatga 1082


>gnl|LJGI|DC594778 similar to UniRef100_A7P2V2 Cluster: Chromosome chr1 scaffold_5,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr1 scaffold_5, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (8%)
          Length = 279

 Score =  464 bits (234), Expect = e-130
 Identities = 272/283 (96%), Gaps = 4/283 (1%)
 Strand = Plus / Plus

                                                                        
Query: 919  tataatcctatgtctcatccaccaccaatgatgcctatgaatatgatgcatccacctccc 978
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    tataatcctatgtctcatccaccaccaatgatgcctatgaatatgatgcatccacctccc 60

                                                                        
Query: 979  atgcctcaaggaatgccaccaccaccgcctgaggaagctcctcccccacttccagaggaa 1038
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 61   atgcctcaaggaatgccaccaccaccgcctgaggaagctcctcccccacttcc-gaggaa 119

                                                                        
Query: 1039 ccagaaccaaagaagcaaaagcttgatgattcttctctgatcccagaagatcaatttctg 1098
            |||||||||||   |   | || |||||||||||||||||||||| || |||||||||||
Sbjct: 120  ccagaaccaaaaggg---aggcgtgatgattcttctctgatcccanaaaatcaatttctg 176

                                                                        
Query: 1099 gcccaacatcccggacctgttcgcatcagtatatctgttcctaatgttgatgaaggaaat 1158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177  gcccaacatcccggacctgttcgcatcagtatatctgttcctaatgttgatgaaggaaat 236

                                                       
Query: 1159 ctcaaaggacaagttctggaaataactgtgcaatcgctgactg 1201
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237  ctcaaaggacaagttctggaaataactgtgcaatcgctgactg 279


>gnl|LJGI|TC67211 similar to UniRef100_A7P2V2 Cluster: Chromosome chr1 scaffold_5,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr1 scaffold_5, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (45%)
          Length = 1386

 Score =  369 bits (186), Expect = e-101
 Identities = 213/221 (96%), Gaps = 1/221 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    atggaaatggatatggatgaggaagaggcccagttagttgcagagggcatgagagctgct 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 atggaaatggatatggatgaggaagaggcccagttagttgcagagggcatgagagctgct 1226

                                                                        
Query: 61   agtttggaagacaaggatgatgggaagaagaacgaaatgagggttactgaagaccctgaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 agtttggaagacaaggatgatgggaagaagaacgaaatgagggttactgaagaccctgaa 1286

                                                                        
Query: 121  ccaccaatgaggattgtgaggaactggaagagaccagaggacagagttcctgcagaaaga 180
            || || |||||||||||||||||||||||||||||||| |||||||||||||||  ||||
Sbjct: 1287 ccgcccatgaggattgtgaggaactggaagagaccagaagacagagttcctgcacnaaga 1346

                                                     
Query: 181  gatccaaccaagtttgttgtttctcctatcactggtgagct 221
            ||||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 1347 gatcc-accaagtgtgttgtttctcctatcaccggtgagct 1386


>gnl|LJGI|TC81210 similar to UniRef100_Q8RXF1 Cluster: Probable splicing factor 3
            subunit 1; n=1; Arabidopsis thaliana|Rep: Probable
            splicing factor 3 subunit 1 - Arabidopsis thaliana
            (Mouse-ear cress), partial (8%)
          Length = 668

 Score =  274 bits (138), Expect = 1e-72
 Identities = 171/182 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1199 ctgaaactgttgccagtctgaaggaaaaaattgccggggaaatccagctccctgctaaca 1258
            |||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| 
Sbjct: 9    ctgaaactgttgcccgtctgaaggaaaaaattgctggggatatccagctccctgctaacc 68

                                                                        
Query: 1259 agcagaaattgagtggaaagccaggcttttttaaggataatttgtcacttgctcattaca 1318
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 69   agcagaaattgagtggaaagccaggctttcttaaggataatttgtcacttgctcattacc 128

                                                                        
Query: 1319 acgtcagtggaggagagacacttgccctgtccttaagagagcgtggtggtagaaagagat 1378
            | ||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 129  atgtcagcggaggagaaacacttaccctatccttaagagagcgtggtggtagaaagagat 188

              
Query: 1379 ga 1380
            ||
Sbjct: 189  ga 190


>gnl|LJGI|TC78133 similar to UniRef100_A7P2V2 Cluster: Chromosome chr1 scaffold_5,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr1 scaffold_5, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (4%)
          Length = 763

 Score =  190 bits (96), Expect = 2e-47
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1285 ttttttaaggataatttgtcacttgctcattacaacgtcagtggaggagagacacttgcc 1344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5    ttttttaaggataatttgtcacttgctcattacaacgtcagtggaggagagacacttgcc 64

                                                
Query: 1345 ctgtccttaagagagcgtggtggtagaaagagatga 1380
            ||||||||||||||||||||||||||||||||||||
Sbjct: 65   ctgtccttaagagagcgtggtggtagaaagagatga 100