Miyakogusa Predicted Gene
- Lj3g3v2665440.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2665440.1 Non Chatacterized Hit- tr|H3GGH2|H3GGH2_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,43.09,2e-18,Ubiquitin homologues,Ubiquitin; seg,NULL;
Ubiquitin-like,NULL; no description,NULL;
UBIQUITIN_2,Ubiq,CUFF.44544.1
(1380 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81907 similar to UniRef100_A7P2V2 Cluster: Chromosome... 1453 0.0
gnl|LJGI|DC594778 similar to UniRef100_A7P2V2 Cluster: Chromosom... 464 e-130
gnl|LJGI|TC67211 similar to UniRef100_A7P2V2 Cluster: Chromosome... 369 e-101
gnl|LJGI|TC81210 similar to UniRef100_Q8RXF1 Cluster: Probable s... 274 1e-72
gnl|LJGI|TC78133 similar to UniRef100_A7P2V2 Cluster: Chromosome... 190 2e-47
>gnl|LJGI|TC81907 similar to UniRef100_A7P2V2 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (37%)
Length = 1221
Score = 1453 bits (733), Expect = 0.0
Identities = 1010/1100 (91%), Gaps = 33/1100 (3%)
Strand = Plus / Plus
Query: 296 ggatgtttgccaaaattcgagaaacaactctggctcaggatgatgaaatctcaagaaaca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatgtttgccaaaattcgagaaacaactctggctcaggatgatgaaatctcaagaaaca 60
Query: 356 ttgttggactagcaaggactcgtcctgatatctttggtactacggaggaagaggtttcca 415
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61 ttgttggacttgcaaggactcgtcctgatatctttggtacaacggaggaagaggtttcca 120
Query: 416 atgctgtcaaggcagaaattgagaagaaaaatgatgagcaacctaagcaggttatatggg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgctgtcaaggcagaaattgagaagaaaaatgatgagcaacctaagcaggttatatggg 180
Query: 476 atggtcacacgggaagtattggccgtactgcaaaccaagccatgtcacagagtattggga 535
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 181 atggtcacactggaagtattggccgtactgcaaaccaagccatgtcacagagtattggaa 240
Query: 536 gtgaggatcaaaatgatgcttctaataatgaggccaggaaccttcctggtcctgctgcac 595
||||||||||||||||||||||||| |||| | || |||||||||||||||||||||||
Sbjct: 241 gtgaggatcaaaatgatgcttctaactatgaaggcaagaaccttcctggtcctgctgcac 300
Query: 596 ctcctccaagacctggtatgccttcaattcgtcctcttccaccaccacctggactagcat 655
| |||||||| || || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 301 cccctccaaggcccggcatgccttcaattcgtcctcttccgccaccacctggactagcat 360
Query: 656 tgaatcttcctcgtgttcctcccaa---ctttcagtattctgctcagcatagtgccggcc 712
||||||||||||||||||||||||| | |||||||| ||||| |||| |||||
Sbjct: 361 tgaatcttcctcgtgttcctcccaatgtcgttcagtat------cagcacagtggcggcc 414
Query: 713 ttccaatgcctcctccaagaccaccagtcattcccatgattccatctgtccggcctgctc 772
||||||||||||||||||||||||||| | ||||||||||||||||| || ||||
Sbjct: 415 ttccaatgcctcctccaagaccaccag------ctatgattccatctgtccgcccagctc 468
Query: 773 cccctcctccaatgcaaatgacgtctggacagcagtctgttatggctggtcaacaacctc 832
||||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||
Sbjct: 469 cccctcctccaatgcaaatgaattctggacagcagtctgttatgggtggtcaaccacatc 528
Query: 833 caatgg---ctccatcaatttctatgaatggccaaccaatgcacatacctccaccacc-- 887
| ||| |||||||||||||||||||| ||||| ||||||||| |||||||||||
Sbjct: 529 cgatgatgcctccatcaatttctatgaatagccaaggaatgcacatgcctccaccaccac 588
Query: 888 -tggatctcagttcactcctgttccgaggcct---tataatcctatgtctcatccaccac 943
|||||||||||||||||||||||| ||||| | | |||||||||||||||||||
Sbjct: 589 ctggatctcagttcactcctgttccacggcctccttttgttcctatgtctcatccaccat 648
Query: 944 caatgatgcctatgaatatgatgcatccacctcccatgcctcaaggaatgccaccacc-- 1001
||||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct: 649 caatgatgcctatga------tgcatccaccacccttgcctcaaggaatgccaccacccc 702
Query: 1002 -accgcctgaggaagctcctcccccacttccagaggaaccagaaccaaagaagcaaaagc 1060
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 703 caccgcctgaggaagctcttcccccacttccagaggaaccagaaccaaagaggcaaaagc 762
Query: 1061 ttgatgattcttctctgatcccagaagatcaatttctggcccaacatcccggacctgttc 1120
||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||
Sbjct: 763 ttgatgattcttctctgattccagaagatcaatttctggctcagcatccgggacctgttc 822
Query: 1121 gcatcagtatatctgttcctaatgttgatgaaggaaatctcaaaggacaagttctggaaa 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gcatcagtatatctgttcctaatgttgatgaaggaaatctcaaaggacaagttctggaaa 882
Query: 1181 taactgtgcaatcgctgactgaaactgttgccagtctgaaggaaaaaattgccggggaaa 1240
|||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 883 taaccttgcaatctctgtctgaaactgttgccagtctgaaggaaaaaattgctggggata 942
Query: 1241 tccagctccctgctaacaagcagaaattgagtggaaagccaggcttttttaaggataatt 1300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 943 tccagctccctgctaacaagcagaaattgagtggaaagccaggctttcttaaggataatt 1002
Query: 1301 tgtcacttgctcattacaacgtcagtggaggagagacacttgccctgtccttaagagagc 1360
||||||||||||||||||| ||||| |||||||| |||||| |||| |||||||||||||
Sbjct: 1003 tgtcacttgctcattacaatgtcagcggaggagaaacacttaccctatccttaagagagc 1062
Query: 1361 gtggtggtagaaagagatga 1380
||||||||||||||||||||
Sbjct: 1063 gtggtggtagaaagagatga 1082
>gnl|LJGI|DC594778 similar to UniRef100_A7P2V2 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (8%)
Length = 279
Score = 464 bits (234), Expect = e-130
Identities = 272/283 (96%), Gaps = 4/283 (1%)
Strand = Plus / Plus
Query: 919 tataatcctatgtctcatccaccaccaatgatgcctatgaatatgatgcatccacctccc 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tataatcctatgtctcatccaccaccaatgatgcctatgaatatgatgcatccacctccc 60
Query: 979 atgcctcaaggaatgccaccaccaccgcctgaggaagctcctcccccacttccagaggaa 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 61 atgcctcaaggaatgccaccaccaccgcctgaggaagctcctcccccacttcc-gaggaa 119
Query: 1039 ccagaaccaaagaagcaaaagcttgatgattcttctctgatcccagaagatcaatttctg 1098
||||||||||| | | || |||||||||||||||||||||| || |||||||||||
Sbjct: 120 ccagaaccaaaaggg---aggcgtgatgattcttctctgatcccanaaaatcaatttctg 176
Query: 1099 gcccaacatcccggacctgttcgcatcagtatatctgttcctaatgttgatgaaggaaat 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gcccaacatcccggacctgttcgcatcagtatatctgttcctaatgttgatgaaggaaat 236
Query: 1159 ctcaaaggacaagttctggaaataactgtgcaatcgctgactg 1201
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ctcaaaggacaagttctggaaataactgtgcaatcgctgactg 279
>gnl|LJGI|TC67211 similar to UniRef100_A7P2V2 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (45%)
Length = 1386
Score = 369 bits (186), Expect = e-101
Identities = 213/221 (96%), Gaps = 1/221 (0%)
Strand = Plus / Plus
Query: 1 atggaaatggatatggatgaggaagaggcccagttagttgcagagggcatgagagctgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 atggaaatggatatggatgaggaagaggcccagttagttgcagagggcatgagagctgct 1226
Query: 61 agtttggaagacaaggatgatgggaagaagaacgaaatgagggttactgaagaccctgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 agtttggaagacaaggatgatgggaagaagaacgaaatgagggttactgaagaccctgaa 1286
Query: 121 ccaccaatgaggattgtgaggaactggaagagaccagaggacagagttcctgcagaaaga 180
|| || |||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 1287 ccgcccatgaggattgtgaggaactggaagagaccagaagacagagttcctgcacnaaga 1346
Query: 181 gatccaaccaagtttgttgtttctcctatcactggtgagct 221
||||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 1347 gatcc-accaagtgtgttgtttctcctatcaccggtgagct 1386
>gnl|LJGI|TC81210 similar to UniRef100_Q8RXF1 Cluster: Probable splicing factor 3
subunit 1; n=1; Arabidopsis thaliana|Rep: Probable
splicing factor 3 subunit 1 - Arabidopsis thaliana
(Mouse-ear cress), partial (8%)
Length = 668
Score = 274 bits (138), Expect = 1e-72
Identities = 171/182 (93%)
Strand = Plus / Plus
Query: 1199 ctgaaactgttgccagtctgaaggaaaaaattgccggggaaatccagctccctgctaaca 1258
|||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 9 ctgaaactgttgcccgtctgaaggaaaaaattgctggggatatccagctccctgctaacc 68
Query: 1259 agcagaaattgagtggaaagccaggcttttttaaggataatttgtcacttgctcattaca 1318
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 69 agcagaaattgagtggaaagccaggctttcttaaggataatttgtcacttgctcattacc 128
Query: 1319 acgtcagtggaggagagacacttgccctgtccttaagagagcgtggtggtagaaagagat 1378
| ||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 129 atgtcagcggaggagaaacacttaccctatccttaagagagcgtggtggtagaaagagat 188
Query: 1379 ga 1380
||
Sbjct: 189 ga 190
>gnl|LJGI|TC78133 similar to UniRef100_A7P2V2 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (4%)
Length = 763
Score = 190 bits (96), Expect = 2e-47
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1285 ttttttaaggataatttgtcacttgctcattacaacgtcagtggaggagagacacttgcc 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ttttttaaggataatttgtcacttgctcattacaacgtcagtggaggagagacacttgcc 64
Query: 1345 ctgtccttaagagagcgtggtggtagaaagagatga 1380
||||||||||||||||||||||||||||||||||||
Sbjct: 65 ctgtccttaagagagcgtggtggtagaaagagatga 100