Miyakogusa Predicted Gene

Lj3g3v2612450.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v2612450.1 Non Chatacterized Hit- tr|C5X8R2|C5X8R2_SORBI
Putative uncharacterized protein Sb02g002080
OS=Sorghu,35.14,0.00005,seg,NULL; AP2,AP2/ERF domain; AP2_ERF,AP2/ERF
domain; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NUL,CUFF.44312.1
         (792 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS342341 homologue to UniRef100_Q6PQQ3 Cluster: AP2-lik...    86   4e-16
gnl|LJGI|TC58976 homologue to UniRef100_A9JQY7 Cluster: AP2 prot...    86   4e-16

>gnl|LJGI|FS342341 homologue to UniRef100_Q6PQQ3 Cluster: AP2-like ethylene-responsive
           transcription factor AINTEGUMENTA-LIKE 5; n=1;
           Arabidopsis thaliana|Rep: AP2-like ethylene-responsive
           transcription factor AINTEGUMENTA-LIKE 5 - Arabidopsis
           thaliana (Mouse-ear cress), partial (11%)
          Length = 723

 Score = 85.7 bits (43), Expect = 4e-16
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                       
Query: 709 accaggcatagatggactgggagatatgaggctcatttgtgggataacagttgcagaaag 768
           ||||| ||||||||||||||||||||||| |||||| | |||||||| ||||| |||| |
Sbjct: 449 accagacatagatggactgggagatatgaagctcatctatgggataatagttgtagaagg 508

                                  
Query: 769 gaagggcaaacaaggaaaggaag 791
           ||||| ||||  |||||||||||
Sbjct: 509 gaaggacaaagtaggaaaggaag 531


>gnl|LJGI|TC58976 homologue to UniRef100_A9JQY7 Cluster: AP2 protein; n=1; Elaeis
           guineensis|Rep: AP2 protein - Elaeis guineensis var.
           tenera (Oil palm), partial (42%)
          Length = 1188

 Score = 85.7 bits (43), Expect = 4e-16
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                       
Query: 709 accaggcatagatggactgggagatatgaggctcatttgtgggataacagttgcagaaag 768
           ||||| ||||||||||||||||||||||| |||||| | |||||||| ||||| |||| |
Sbjct: 609 accagacatagatggactgggagatatgaagctcatctatgggataatagttgtagaagg 668

                                  
Query: 769 gaagggcaaacaaggaaaggaag 791
           ||||| ||||  |||||||||||
Sbjct: 669 gaaggacaaagtaggaaaggaag 691