Miyakogusa Predicted Gene
- Lj3g3v2576580.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2576580.1 Non Chatacterized Hit- tr|C6SZ12|C6SZ12_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56808 PE,95.31,0,snRNP
Sm proteins,Ribonucleoprotein LSM domain, eukaryotic/archaea-type;
LSM,Ribonucleoprotein LSM d,CUFF.44265.1
(387 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC79366 similar to UniRef100_A7PDU1 Cluster: Chromosome... 767 0.0
gnl|LJGI|TC69723 similar to UniRef100_A7PDU1 Cluster: Chromosome... 62 3e-09
>gnl|LJGI|TC79366 similar to UniRef100_A7PDU1 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (53%)
Length = 1105
Score = 767 bits (387), Expect = 0.0
Identities = 387/387 (100%)
Strand = Plus / Plus
Query: 1 atgtcttgggcaggccctgaggatatctacctttctacttcacttgctagttatcttgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atgtcttgggcaggccctgaggatatctacctttctacttcacttgctagttatcttgat 507
Query: 61 aagaaacttcttgtattgctgagagatgggagaaagctcatggggacacttcgctctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aagaaacttcttgtattgctgagagatgggagaaagctcatggggacacttcgctctttt 567
Query: 121 gatcaatttgctaatgccgttctcgagggtgcctgtgagagggttattgttggtgacctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gatcaatttgctaatgccgttctcgagggtgcctgtgagagggttattgttggtgacctg 627
Query: 181 tattgtgacatcccattgggcctttatgtaattcgtggggagaatgttgttctcattggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tattgtgacatcccattgggcctttatgtaattcgtggggagaatgttgttctcattggt 687
Query: 241 gaactggacttggagagggaggaactccccccacatatggtgcgtgtttccacagcagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaactggacttggagagggaggaactccccccacatatggtgcgtgtttccacagcagaa 747
Query: 301 attaagagggcacagaaagcagaaagggatgcttcagatctgaaagggactatgagaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 attaagagggcacagaaagcagaaagggatgcttcagatctgaaagggactatgagaaaa 807
Query: 361 agaatggaattccttgacttggactag 387
|||||||||||||||||||||||||||
Sbjct: 808 agaatggaattccttgacttggactag 834
>gnl|LJGI|TC69723 similar to UniRef100_A7PDU1 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (53%)
Length = 1131
Score = 61.9 bits (31), Expect = 3e-09
Identities = 97/119 (81%)
Strand = Plus / Plus
Query: 112 cgctcttttgatcaatttgctaatgccgttctcgagggtgcctgtgagagggttattgtt 171
||||| ||||||||||||||||| | ||||| || ||||| ||||| || || |||||
Sbjct: 279 cgctcctttgatcaatttgctaacgttgttcttgaaggtgcatgtgaaagagtaattgtc 338
Query: 172 ggtgacctgtattgtgacatcccattgggcctttatgtaattcgtggggagaatgttgt 230
|| || || || ||||| |||| || || |||||||| ||||||||||| ||||||||
Sbjct: 339 ggcgatctttactgtgatgtccctttaggtctttatgtgattcgtggggaaaatgttgt 397