Miyakogusa Predicted Gene
- Lj3g3v2517630.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2517630.2 tr|B9HM08|B9HM08_POPTR Pseudo response regulator
OS=Populus trichocarpa GN=PtpRR7 PE=4 SV=1,31.16,4e-17,no
description,NULL; CheY-like,CheY-like superfamily; seg,NULL;
RESPONSE_REGULATORY,Signal transduct,CUFF.44114.2
(1995 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69212 similar to UniRef100_Q6LA42 Cluster: Two-compon... 163 5e-39
gnl|LJGI|TC59681 similar to UniRef100_Q6LA42 Cluster: Two-compon... 163 5e-39
gnl|LJGI|TC67046 157 3e-37
gnl|LJGI|TC74612 similar to UniRef100_Q2HTB9 Cluster: Response r... 66 9e-10
>gnl|LJGI|TC69212 similar to UniRef100_Q6LA42 Cluster: Two-component response
regulator-like APRR5; n=1; Arabidopsis thaliana|Rep:
Two-component response regulator-like APRR5 -
Arabidopsis thaliana (Mouse-ear cress), partial (24%)
Length = 772
Score = 163 bits (82), Expect = 5e-39
Identities = 220/266 (82%)
Strand = Plus / Plus
Query: 232 ttaaaggcatgggaagcgttgaagagtaagggacctgagatagatctcatattgacagaa 291
|||||||||||||| | ||||||| || | || ||| |||||||||||||| || |||
Sbjct: 304 ttaaaggcatgggagacattgaagaacaaagcacatgacatagatctcatattaactgaa 363
Query: 292 ttggagttgccagaaatatctggatttgctctactttctatgatcatggagcatgatgtg 351
| || ||||| ||||||||||||| | || ||| || | |||| || ||||| |
Sbjct: 364 gtcgatttgccttcaatatctggattttcacttcttactctaatcactgaccatgacttc 423
Query: 352 tgcaaaaacattcctgtgataatgatgtcttctcaggattcagttagcatggtgttgaaa 411
|||||| |||||||||| ||||||||||| ||| | || |||||||||||||| || |||
Sbjct: 424 tgcaaacacattcctgtcataatgatgtcatctaatgactcagttagcatggtcttcaaa 483
Query: 412 tgcatgttaaaaggtgcagctgattttcttatcaaaccagttaggaaaaatgagcttacc 471
|||||||||||||||||||||||||||||||||||||| || |||| |||||||| |
Sbjct: 484 tgcatgttaaaaggtgcagctgattttcttatcaaacctgtaaggaggaatgagctcagg 543
Query: 472 aatttgtggcagcatgtatggagaag 497
|| |||||||||||||| ||||||||
Sbjct: 544 aacttgtggcagcatgtctggagaag 569
>gnl|LJGI|TC59681 similar to UniRef100_Q6LA42 Cluster: Two-component response
regulator-like APRR5; n=1; Arabidopsis thaliana|Rep:
Two-component response regulator-like APRR5 -
Arabidopsis thaliana (Mouse-ear cress), partial (24%)
Length = 845
Score = 163 bits (82), Expect = 5e-39
Identities = 220/266 (82%)
Strand = Plus / Plus
Query: 232 ttaaaggcatgggaagcgttgaagagtaagggacctgagatagatctcatattgacagaa 291
|||||||||||||| | ||||||| || | || ||| |||||||||||||| || |||
Sbjct: 197 ttaaaggcatgggagacattgaagaacaaagcacatgacatagatctcatattaactgaa 256
Query: 292 ttggagttgccagaaatatctggatttgctctactttctatgatcatggagcatgatgtg 351
| || ||||| ||||||||||||| | || ||| || | |||| || ||||| |
Sbjct: 257 gtcgatttgccttcaatatctggattttcacttcttactctaatcactgaccatgacttc 316
Query: 352 tgcaaaaacattcctgtgataatgatgtcttctcaggattcagttagcatggtgttgaaa 411
|||||| |||||||||| ||||||||||| ||| | || |||||||||||||| || |||
Sbjct: 317 tgcaaacacattcctgtcataatgatgtcatctaatgactcagttagcatggtcttcaaa 376
Query: 412 tgcatgttaaaaggtgcagctgattttcttatcaaaccagttaggaaaaatgagcttacc 471
|||||||||||||||||||||||||||||||||||||| || |||| |||||||| |
Sbjct: 377 tgcatgttaaaaggtgcagctgattttcttatcaaacctgtaaggaggaatgagctcagg 436
Query: 472 aatttgtggcagcatgtatggagaag 497
|| |||||||||||||| ||||||||
Sbjct: 437 aacttgtggcagcatgtctggagaag 462
>gnl|LJGI|TC67046
Length = 612
Score = 157 bits (79), Expect = 3e-37
Identities = 213/257 (82%), Gaps = 3/257 (1%)
Strand = Plus / Plus
Query: 919 agcaaagacaatcctaatattgacaccgagatacatgggtggagtcatgagctggtagag 978
|||||||||||| |||||||||| || ||||||||| | |||| |||||||| ||||
Sbjct: 255 agcaaagacaattctaatattgatactcagatacatgagcccagtcgtgagctggcagag 314
Query: 979 ccttctagaggagatattaactttattgccacagttgaaaatcctccaaagcacaaaagt 1038
| | |||||| || ||||||||| |||||||||||||| |||||||| ||||||| || |
Sbjct: 315 catgctagagaagctattaacttgattgccacagttgagaatcctcctaagcacacaaat 374
Query: 1039 gaaaactgttgtcttgatggtgg---taacatgaccaagtttgattctgatacacaattg 1095
|||| || |||||| ||||||| | |||||| || |||||||| ||||||||||||
Sbjct: 375 taaaagtggtgtcttcatggtggaaattacatgatcatgtttgattttgatacacaatta 434
Query: 1096 aagctttctttaagaagagattttcccgacagctcatgtgaaaaacaaagtgaagcaact 1155
|| |||||||||||| ||||||| ||||||| |||||| || || ||||||||||
Sbjct: 435 aaactttctttaagatttgattttctggacagctgatgtgagcaagcaattgaagcaact 494
Query: 1156 ggagaatggcaaagatt 1172
|| ||||||||||||||
Sbjct: 495 ggggaatggcaaagatt 511
>gnl|LJGI|TC74612 similar to UniRef100_Q2HTB9 Cluster: Response regulator receiver;
CCT; n=1; Medicago truncatula|Rep: Response regulator
receiver; CCT - Medicago truncatula (Barrel medic),
partial (22%)
Length = 866
Score = 65.9 bits (33), Expect = 9e-10
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 1802 ctcatcgctccagtcatagagaagcagctcttacaaagtatctactgaagcggaaagaga 1861
||||||| |||| || ||||||||||| |||||||||| | ||||||||| || || |
Sbjct: 315 ctcatcggaccagccaaagagaagcagcccttacaaagttccgactgaagcgaaaggaca 374
Query: 1862 gatgttatgtgaaaaaggttcgatatcaaagtcggaaaaaatttgcagagcagcgccctc 1921
|||| |||| |||||||| |||||| |||| |||||| | | ||||| |||| ||||
Sbjct: 375 gatgctatgataaaaaggtacgatatgaaagcaggaaaagactggcagacaagcggcctc 434
Query: 1922 gggtaaagggacaatttgtatgccaagta 1950
|||| || ||||| ||||| ||||||||
Sbjct: 435 gggtgaaaggacagtttgttcgccaagta 463