Miyakogusa Predicted Gene
- Lj3g3v2517590.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2517590.1 tr|Q8W214|Q8W214_SOLTU Single-stranded DNA
binding protein (Precursor) OS=Solanum tuberosum PE=2
SV=,33.7,7e-19,seg,NULL; RNA-binding domain, RBD,NULL; RNA recognition
motif,RNA recognition motif domain; RRM_1,RN,CUFF.44112.1
(876 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62000 weakly similar to UniRef100_A7PXT7 Cluster: Chr... 1713 0.0
gnl|LJGI|AU088852 weakly similar to UniRef100_A7PXT7 Cluster: Ch... 1035 0.0
gnl|LJGI|TC69459 weakly similar to UniRef100_A7PXT7 Cluster: Chr... 78 1e-13
>gnl|LJGI|TC62000 weakly similar to UniRef100_A7PXT7 Cluster: Chromosome chr15
scaffold_37, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr15 scaffold_37, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (57%)
Length = 1322
Score = 1713 bits (864), Expect = 0.0
Identities = 874/876 (99%), Gaps = 1/876 (0%)
Strand = Plus / Plus
Query: 1 atggcactagctctgctaccttctttcccctctccctcttcagctctaaccttcaaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 atggcactagctctgctaccttctttcccctctccctcttcagctctaaccttcaaccac 111
Query: 61 aaaccccaaccaccaccttcatccaaacccttcgtttcacatttcagacacccaaactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aaaccccaaccaccaccttcatccaaacccttcgtttcacatttcagacacccaaactgt 171
Query: 121 gatccctgcttattctccacaaccacaattctacaaccttctacatggaaacctaccctt 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gatccctgcctattctccacaaccacaattctacaaccttctacatggaaacctaccctt 231
Query: 181 tttgtggcggcagcgattccagaagcggttaacggagaaaaatctctcaacactcaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tttgtggcggcagcgattccagaagcggttaacggagaaaaatctctcaacactcaaaac 291
Query: 241 gacgacgttttcaagaatgaggaggaggagcagcaaccaccgcagaggaggcccagagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gacgacgttttcaagaatgaggaggaggagcagcaaccaccgcagaggaggcccagagga 351
Query: 301 ccctgtgaaatctatgtctgcaatcttcccagaagctgcaacgctgctcacctacttgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ccctgtgaaatctatgtctgcaatcttcccagaagctgcaacgctgctcacctacttgat 411
Query: 361 ttgttcaagccttatggaaccattatatctgttgaggtttccagaaatgctgagactggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttgttcaagccttatggaaccattatatctgttgaggtttccagaaatgctgagactggt 471
Query: 421 gaaagtaggggatgtggttatgtcataatggaatccataaactcagcaaaaagtgcaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaaagtaggggatgtggttatgtcataatggaatccataaactcagcaaaaagtgcaatt 531
Query: 481 gctgcattggatggatcagatgttggggggcgcgaattgcgggttaaattttcagttgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gctgcattggatggatcagatgttggggggcgcgaattgcgggttaaattttcagttgag 591
Query: 541 atgagtcttgaaaggacggatgccaatgcgaatgcgggggaaatgtacgcttctcccaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atgagtcttgaaaggacggatgccaatgcgaatgcgggggaaatgtacgcttctcccaag 651
Query: 601 agaacattttactatgaagctcctcataagttgtatgtgggcaatcttgctagggttgtt 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 652 agaacattttactatgaagctcctcataagttgtatgtgggc-atcttgctagggttgtt 710
Query: 661 aaacctgagcagttgagaaatcattttatcagatttgggaatgtgcttagtgttagagtg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aaacctgagcagttgagaaatcattttatcagatttgggaatgtgcttagtgttagagtg 770
Query: 721 ttgcatgatcgtaaacaagggaaagcccgggtctatgcgtttctctcctttgaatcagag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ttgcatgatcgtaaacaagggaaagcccgggtctatgcgtttctctcctttgaatcagag 830
Query: 781 gctgaacgtgatgcagcaatgtctcttaatggaacagaattttatggccgtactattgta 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gctgaacgtgatgcagcaatgtctcttaatggaacagaattttatggccgtactattgta 890
Query: 841 gtcagagagggcgcacagaggactgagccttaaccg 876
||||||||||||||||||||||||||||||||||||
Sbjct: 891 gtcagagagggcgcacagaggactgagccttaaccg 926
>gnl|LJGI|AU088852 weakly similar to UniRef100_A7PXT7 Cluster: Chromosome chr15
scaffold_37, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr15 scaffold_37, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 716
Score = 1035 bits (522), Expect = 0.0
Identities = 636/671 (94%), Gaps = 8/671 (1%)
Strand = Plus / Plus
Query: 1 atggcactagctctgctaccttctttcccctctccctcttcagctctaaccttcaaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28 atggcactagctctgctaccttctttcccctctccctcttcagctctaaccttcaaccac 87
Query: 61 aaaccccaaccaccaccttcatccaaacccttcgtttcacatttcagacacccaaactgt 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 88 aaaccccaaccaccaccttcatccaaacccttcgtttcacatttcanacacccaaactgt 147
Query: 121 gatccctgcttattctccacaaccacaattctacaaccttctacatggaaacctaccctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gatccctgcttattctccacaaccacaattctacaaccttctacatggaaacctaccctt 207
Query: 181 tttgtggcggcagcgattccagaagcggttaacggagaaaaatctctcaacactcaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tttgtggcggcagcgattccagaagcggttaacggagaaaaatctctcaacactcaaaac 267
Query: 241 gacgacgttttcaagaatgaggaggaggagcagcaaccaccgcagaggaggcccagagga 300
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 268 gacgacgttttcaagaatgaggaggaggagcagcaaccaccgcagangangcccagagga 327
Query: 301 ccctgtgaaatctatgtctgcaatcttcccagaagctgcaacgctgctcacctacttgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ccctgtgaaatctatgtctgcaatcttcccagaagctgcaacgctgctcacctacttgat 387
Query: 361 ttgttcaagccttatggaaccattatatctgttgaggtttccagaaatgctgagactggt 420
|||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||
Sbjct: 388 ttgttcaagccttatggaaccattatntctgttgaggtttccanaaatgctgaaactggt 447
Query: 421 gaaagtaggggatgtggttatgtcataatggaatccataaactcagcaaaaagtgcaatt 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 448 gaaagtaggggatgtggttatgtc-taatggaatccataaactcagcaaaaagtgcaatt 506
Query: 481 gctgcattgg-atggatcagatgttggggggcgcgaattgcgggttaaattttcagttga 539
|||||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct: 507 gctgcattgggatggatcanatgttggggggc-cgaattgcgggttaaattttcanttga 565
Query: 540 ga-tgagtcttgaaaggacggatgccaatgcgaatgcgggggaaatgt-acgcttctccc 597
| ||| |||||||||||| ||||||||| ||||||| |||||||||| | ||| ||||
Sbjct: 566 aaatgaatcttgaaaggacngatgccaatncgaatgcnggggaaatgttncncttntccc 625
Query: 598 aagagaacattttactatgaagctcctcataa--gttgtatgtgggcaatcttgcta-gg 654
| | || ||||||||||||| |||||| ||| || | | | ||||||||||||| ||
Sbjct: 626 annaaaanattttactatgaaactcctcntaaattttttttttnggcaatcttgctangg 685
Query: 655 gttgttaaacc 665
|||||||||||
Sbjct: 686 gttgttaaacc 696
>gnl|LJGI|TC69459 weakly similar to UniRef100_A7PXT7 Cluster: Chromosome chr15
scaffold_37, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr15 scaffold_37, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (66%)
Length = 1129
Score = 77.8 bits (39), Expect = 1e-13
Identities = 144/179 (80%)
Strand = Plus / Plus
Query: 362 tgttcaagccttatggaaccattatatctgttgaggtttccagaaatgctgagactggtg 421
|||||| |||| | |||||||||||||||| ||||||| | | |||| ||| ||||
Sbjct: 312 tgttcaggcctcacggaaccattatatctgccgaggtttgccggcatgcccagagcggtg 371
Query: 422 aaagtaggggatgtggttatgtcataatggaatccataaactcagcaaaaagtgcaattg 481
|||||| || |||| |||||||| |||| ||| || ||| ||||||| |||| ||
Sbjct: 372 aaagtaaagggtgtgcttatgtcacaatgtcatctattgtctctgcaaaaaatgcagttt 431
Query: 482 ctgcattggatggatcagatgttggggggcgcgaattgcgggttaaattttcagttgag 540
||||||||||||||| |||||||| ||||| ||| ||||||||| |||||| ||||||
Sbjct: 432 ctgcattggatggattggatgttggtgggcgagaaatgcgggttagattttctgttgag 490
Score = 58.0 bits (29), Expect = 1e-07
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 610 tactatgaagctcctcataagttgtatgtgggcaatcttgc 650
||||||||||||||||||||| ||||||| || ||||||||
Sbjct: 548 tactatgaagctcctcataagctgtatgttgggaatcttgc 588
Score = 52.0 bits (26), Expect = 6e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 787 cgtgatgcagcaatgtctcttaatggaacagaattttatggccgta 832
||||||||||||||||| || |||||||| ||||||| ||| ||||
Sbjct: 725 cgtgatgcagcaatgtccctcaatggaactgaattttgtggtcgta 770