Miyakogusa Predicted Gene

Lj3g3v2478840.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v2478840.2 Non Chatacterized Hit- tr|I1MKG1|I1MKG1_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,85.29,0,Ras,Small
GTPase superfamily; P-loop containing nucleoside triphosphate
hydrolases,NULL; no descript,CUFF.44084.2
         (413 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC59323 UniRef100_Q40192 Cluster: RAB11B; n=1; Lotus ja...   248   2e-65
gnl|LJGI|BW595035 homologue to UniRef100_Q40192 Cluster: RAB11B;...   167   7e-41

>gnl|LJGI|TC59323 UniRef100_Q40192 Cluster: RAB11B; n=1; Lotus japonicus|Rep: RAB11B
           - Lotus japonicus, complete
          Length = 1331

 Score =  248 bits (125), Expect = 2e-65
 Identities = 224/257 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctggtgtatgacataactaagaggcaatcctttgatcatattgcgaggtgggttgag 60
           |||||||||||||||||||| || || || || ||||||||| | || ||||||||||||
Sbjct: 689 atgctggtgtatgacataacaaaaagacagtcttttgatcatgtggctaggtgggttgag 748

                                                                       
Query: 61  gaactccgagcacacacagatagctccattgtgatcatgctagttgggaacaaaggtgat 120
           || || ||||||||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 749 gagctgcgagcacacgcagacagctccattgtgatcatgctaattgggaacaaaggtgat 808

                                                                       
Query: 121 cttgtggacctgagagtggtcccaactgaagatgcagtggagtatgcagaggagcagggc 180
           |||||||| |  |||||||| |   ||||||||||||| |||| ||||||||| || |||
Sbjct: 809 cttgtggatcaaagagtggtgctctctgaagatgcagttgagtttgcagaggaacaaggc 868

                                                                       
Query: 181 ctgttcttctcagagacttcagctctcagtggtgagaatgtggagagtgcatttctcaaa 240
           || |||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||| 
Sbjct: 869 cttttcttctctgagacttcagctctcactggtgagaacgtggagagtgcgtttctcaag 928

                            
Query: 241 ttgctagaagagatcaa 257
           || ||  ||||||||||
Sbjct: 929 ttacttcaagagatcaa 945


>gnl|LJGI|BW595035 homologue to UniRef100_Q40192 Cluster: RAB11B; n=1; Lotus
           japonicus|Rep: RAB11B - Lotus japonicus, partial (45%)
          Length = 462

 Score =  167 bits (84), Expect = 7e-41
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctggtgtatgacataactaagaggcaatcctttgatcatattgcgaggtgggttgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atgctggtgtatgacataactaagaggcaatcctttgatcatattgcgaggtgggttgag 438

                                   
Query: 61  gaactccgagcacacacagatagc 84
           ||||||||||||||||||||||||
Sbjct: 439 gaactccgagcacacacagatagc 462