Miyakogusa Predicted Gene
- Lj3g3v2309730.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2309730.1 Non Chatacterized Hit- tr|D7G9G5|D7G9G5_ECTSI
Putative uncharacterized protein OS=Ectocarpus
silicul,50,1e-18,L28p-like,NULL; Ribosomal_L28,Ribosomal protein L28;
39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL,Riboso,CUFF.44284.1
(570 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57336 similar to UniRef100_A7NST7 Cluster: Chromosome... 1114 0.0
gnl|LJGI|TC82720 similar to UniRef100_A7PEV2 Cluster: Chromosome... 385 e-106
gnl|LJGI|AV409539 similar to UniRef100_A7NST7 Cluster: Chromosom... 274 6e-73
>gnl|LJGI|TC57336 similar to UniRef100_A7NST7 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (72%)
Length = 975
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Plus
Query: 1 atggcgttcagagggaaagagatgatgaagaaggttctgaagaaagtgggggagaagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 atggcgttcagagggaaagagatgatgaagaaggttctgaagaaagtgggggagaagaat 125
Query: 61 ctgactccaaaagccaaggaatcgttgcagaaatgcattcccaaaaccaagatcgtcatg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ttgactccaaaagccaaggaatcgttgcagaaatgcattcccaaaaccaagatcgtcatg 185
Query: 121 ggtcgtgccaaacgcggtctctttgccggacgacacattcagtttggcaatactgtcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggtcgtgccaaacgcggtctctttgccggacgacacattcagtttggcaatactgtcagt 245
Query: 181 gaagatggcggtaacaagacaaggagaaattggaagcctaatgtccaggacaagcggctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gaagatggcggtaacaagacaaggagaaattggaagcctaatgtccaggacaagcggctg 305
Query: 241 tttagttatattctagatcgacatattcgtgctaaagtcaccactcatgctcttcgttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttagttatattctagatcgacatattcgtgctaaagtcaccactcatgctcttcgttgc 365
Query: 301 atagacaaagcaggtgggattgatgaatacttgctgaaaactccttatcacaagatggac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atagacaaagcaggtgggattgatgaatacttgctgaaaactccttatcacaagatggac 425
Query: 361 acagaaataggcgtcctgtggaaggcaaagattgagaagttgtacgaagagcttggcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acagaaataggcgtcctgtggaaggcaaagattgagaagttgtacgaagagcttggcaag 485
Query: 421 aaggaggttgtgttcttttcacccgaagatgaagcgaactttgaacagagctttaaagat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaggaggttgtgttcttttcacccgaagatgaagcgaactttgaacagagctttaaagat 545
Query: 481 ttgaaactatctgaaagggaagcacgcaaagaaatcagaaaaataatgtatgctgggatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttgaaactatctgaaagggaagcacgcaaagaaatcagaaaaataatgtatgctgggatg 605
Query: 541 ggcaagcacaagctaattggtgttga 566
||||||||||||||||||||||||||
Sbjct: 606 ggcaagcacaagctaattggtgttga 631
>gnl|LJGI|TC82720 similar to UniRef100_A7PEV2 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (62%)
Length = 1559
Score = 385 bits (194), Expect = e-106
Identities = 197/198 (99%)
Strand = Plus / Minus
Query: 1 atggcgttcagagggaaagagatgatgaagaaggttctgaagaaagtgggggagaagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atggcgttcagagggaaagagatgatgaagaaggttctgaagaaagtgggggagaagaat 449
Query: 61 ctgactccaaaagccaaggaatcgttgcagaaatgcattcccaaaaccaagatcgtcatg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttgactccaaaagccaaggaatcgttgcagaaatgcattcccaaaaccaagatcgtcatg 389
Query: 121 ggtcgtgccaaacgcggtctctttgccggacgacacattcagtttggcaatactgtcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggtcgtgccaaacgcggtctctttgccggacgacacattcagtttggcaatactgtcagt 329
Query: 181 gaagatggcggtaacaag 198
||||||||||||||||||
Sbjct: 328 gaagatggcggtaacaag 311
>gnl|LJGI|AV409539 similar to UniRef100_A7NST7 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (20%)
Length = 389
Score = 274 bits (138), Expect = 6e-73
Identities = 144/146 (98%)
Strand = Plus / Plus
Query: 66 tccaaaagccaaggaatcgttgcagaaatgcattcccaaaaccaagatcgtcatgggtcg 125
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tccaaaatcgaaggaatcgttgcagaaatgcattcccaaaaccaagatcgtcatgggtcg 303
Query: 126 tgccaaacgcggtctctttgccggacgacacattcagtttggcaatactgtcagtgaaga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgccaaacgcggtctctttgccggacgacacattcagtttggcaatactgtcagtgaaga 363
Query: 186 tggcggtaacaagacaaggagaaatt 211
||||||||||||||||||||||||||
Sbjct: 364 tggcggtaacaagacaaggagaaatt 389