Miyakogusa Predicted Gene

Lj3g3v2246970.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v2246970.1 tr|D7M9Q0|D7M9Q0_ARALL RNA recognition
motif-containing protein OS=Arabidopsis lyrata subsp. lyrata
,65.52,0.000000000000001,RRM_3,RNA-binding motif; RNA-BINDING
PROTEIN-RELATED,NULL; LUPUS LA PROTEIN-RELATED,NULL; no
descrip,NODE_105060_length_252_cov_24.654762.path3.1
         (189 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC67491 similar to UniRef100_A7P5B6 Cluster: Chromosome...   319   3e-87
gnl|LJGI|TC57686 similar to UniRef100_A7P5B6 Cluster: Chromosome...   264   2e-70
gnl|LJGI|TC71239 similar to UniRef100_A7KF65 Cluster: ATP syntha...    96   9e-20

>gnl|LJGI|TC67491 similar to UniRef100_A7P5B6 Cluster: Chromosome chr4 scaffold_6,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_6, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (11%)
          Length = 678

 Score =  319 bits (161), Expect = 3e-87
 Identities = 179/185 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gtttgaacattgatttcacgatgagagcagaatcaggattcattcgatttgaagaaagtg 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtttgaacattgatttcacgatgggagcagaatcaggattcattcgatttgaagaaagtg 395

                                                                       
Query: 65  aagcggctcaaaaatctcgtgctgctgctgtgctttcaaagaatgggggcttggttgtga 124
           |||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||||||
Sbjct: 396 aagcggctcaaacatctcgtgctgctgctgttatttcagagaatgggggcttggttgtga 455

                                                                       
Query: 125 agaattacattgctatgctagatccagtgactggtgaggctgaaaaagaatactgtagaa 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agaattacattgttatgctagatccagtgactggtgaggctgaaaaagaatactgtagaa 515

                
Query: 185 taaat 189
           |||||
Sbjct: 516 taaat 520


>gnl|LJGI|TC57686 similar to UniRef100_A7P5B6 Cluster: Chromosome chr4 scaffold_6,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr4 scaffold_6, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (72%)
          Length = 1605

 Score =  264 bits (133), Expect = 2e-70
 Identities = 160/169 (94%)
 Strand = Plus / Plus

                                                                        
Query: 11   acattgatttcacgatgagagcagaatcaggattcattcgatttgaagaaagtgaagcgg 70
            ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1092 acattgatttcacgatgggagcagactcaggattcattcgatttgaagaaagtgaagcgg 1151

                                                                        
Query: 71   ctcaaaaatctcgtgctgctgctgtgctttcaaagaatgggggcttggttgtgaagaatt 130
            |||||||||||||||||||||| || |||||| |||| || ||||||||||| |||||||
Sbjct: 1152 ctcaaaaatctcgtgctgctgcagttctttcagagaagggaggcttggttgtaaagaatt 1211

                                                             
Query: 131  acattgctatgctagatccagtgactggtgaggctgaaaaagaatactg 179
            | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 atattgctatgctagatccagtgactggtgaggctgaaaaagaatactg 1260


>gnl|LJGI|TC71239 similar to UniRef100_A7KF65 Cluster: ATP synthase F0 subunit 6;
           n=1; Leucosarcia melanoleuca|Rep: ATP synthase F0
           subunit 6 - Leucosarcia melanoleuca (wonga pigeon),
           partial (9%)
          Length = 727

 Score = 95.6 bits (48), Expect = 9e-20
 Identities = 58/60 (96%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gtttgaacattgatttcacgatgagagcagaatcaggattcattcgatttgaagaaagtg 64
           ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtttgaacatt-atttcacgatgggagcagaatcaggattcattcgatttgaagaaagtg 426