Miyakogusa Predicted Gene
- Lj3g3v2213520.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2213520.1 Non Chatacterized Hit- tr|J3L103|J3L103_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G2,74.14,3e-16,PDEFORMYLASE,Formylmethionine deformylase;
Pep_deformylase,Peptide deformylase; no description,Pepti,CUFF.43679.1
(789 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73896 similar to UniRef100_Q9FUZ0 Cluster: Peptide de... 1179 0.0
gnl|LJGI|AV428617 similar to UniRef100_Q9FUZ0 Cluster: Peptide d... 599 e-170
gnl|LJGI|TC82350 similar to UniRef100_Q9FV53 Cluster: Peptide de... 244 7e-64
gnl|LJGI|BW605578 similar to UniRef100_Q2HVV7 Cluster: Formylmet... 141 7e-33
>gnl|LJGI|TC73896 similar to UniRef100_Q9FUZ0 Cluster: Peptide deformylase,
mitochondrial precursor; n=1; Solanum lycopersicum|Rep:
Peptide deformylase, mitochondrial precursor - Solanum
lycopersicum (Tomato) (Lycopersicon esculentum), partial
(69%)
Length = 691
Score = 1179 bits (595), Expect = 0.0
Identities = 604/607 (99%)
Strand = Plus / Plus
Query: 183 gggtctaacagcagataacaagaagatgaaattgcctgacactgtcaaagctggtgaccc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gggtctaacagcagataacaagaagatgaaattgcctgacactgtcaaagctggtgaccc 61
Query: 243 tgttcttcatgagcctgcccaggaagttaatcccagtgagataaagtcggagagagtgca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgttcttcatgagcctgcccaggaagttaatcccagtgagataaagtcggagagagtgca 121
Query: 303 gaagatcattgatgacatgatccgggtcatgaggaatgctcctggggttggtttagctgc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gaagatcattgatgacatgatccgggtcatgaggaatgctcctggggttggtttagctgc 181
Query: 363 tccccagattggagttcctttaaggataatagttgtggaagataccaaagagtatattag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tccccagattggagttcctttaaggataatagttgtggaagataccaaagagtatattag 241
Query: 423 ttatgccccaaaggaagagacaaaagctcaagatagagtgccttttgatcttttggtgat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttatgccccaaaggaagagacaaaagctcaagatagagtgccttttgatcttttggtgat 301
Query: 483 cctgaatcccaagctagagaagaagagcaacagaactgccctattttttgaagggtgctt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cctgaatcccaagctagagaagaagagcaacagaactgccctattttttgaagggtgctt 361
Query: 543 gagtgttgatggatttagagcagtggtggagcgacatcttgacgttgaagttacaggttt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gagtgttgatggatttagagcagtggtggagcgacatcttgacgttgaagttacaggttt 421
Query: 603 agatcgctacggtgcgccaatcaaaataaatgcgtcgggttggcaggctcggattttaca 662
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 422 agatcgctacggtgccccaatcaaaataaatgcgtcgggttggcaagcccggattttaca 481
Query: 663 acacgagtgtgatcacttggatggcactttgtatgttgataagatggtacctagaacttt 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acacgagtgtgatcacttggatggcactttgtatgttgataagatggtacctagaacttt 541
Query: 723 tagaactgtggacaacttgaacctcccccttggccaggggtgccccaaacttggtcctcg 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tagaactgtggacaacttgaacctcccccttggccaggggtgccccaaacttggtcctcg 601
Query: 783 ctaaccc 789
|||||||
Sbjct: 602 ctaaccc 608
>gnl|LJGI|AV428617 similar to UniRef100_Q9FUZ0 Cluster: Peptide deformylase,
mitochondrial precursor; n=1; Solanum lycopersicum|Rep:
Peptide deformylase, mitochondrial precursor - Solanum
lycopersicum (Tomato) (Lycopersicon esculentum), partial
(17%)
Length = 355
Score = 599 bits (302), Expect = e-170
Identities = 311/314 (99%)
Strand = Plus / Plus
Query: 1 atggaggccttgcacatgcagcgtgtacttcccatatctgctgcccaaaacactctcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 atggaggccttgcacatgcagcgtgtacttcccatatctgctgcccaaaacactctcttt 101
Query: 61 acgcgcccaactgccaccccattatctggagttgcaatggcaaggccaccattgagttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 acgcgcccaactgccaccccattatctggagttgcaatggcaaggccaccattgagttta 161
Query: 121 agcttatcatcttcttctcaagctgccgctgccactgccactgcaagagcagggtggttt 180
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 162 agcttatcatcttcttcttaagctgccgctgtcactgccactgcaagagcagggtggttt 221
Query: 181 ttgggtctaacagcagataacaagaagatgaaattgcctgacactgtcaaagctggtgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ttgggtctaacagcagataacaagaagatgaaattgcctgacactgtcaaagctggtgac 281
Query: 241 cctgttcttcatgagcctgcccaggaagttaatcccagtgagataaagtcggagagagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cctgttcttcatgagcctgcccaggaagttaatcccagtgagataaagtcggagagagtg 341
Query: 301 cagaagatcattga 314
|| |||||||||||
Sbjct: 342 cacaagatcattga 355
>gnl|LJGI|TC82350 similar to UniRef100_Q9FV53 Cluster: Peptide deformylase,
mitochondrial precursor; n=1; Arabidopsis thaliana|Rep:
Peptide deformylase, mitochondrial precursor -
Arabidopsis thaliana (Mouse-ear cress), partial (15%)
Length = 517
Score = 244 bits (123), Expect = 7e-64
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 667 gagtgtgatcacttggatggcactttgtatgttgataagatggtacctagaacttttaga 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagtgtgatcacttggatggcactttgtatgttgataagatggtacctagaacttttaga 60
Query: 727 actgtggacaacttgaacctcccccttggccaggggtgccccaaacttggtcctcgctaa 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actgtggacaacttgaacctcccccttggccaggggtgccccaaacttggtcctcgctaa 120
Query: 787 ccc 789
|||
Sbjct: 121 ccc 123
>gnl|LJGI|BW605578 similar to UniRef100_Q2HVV7 Cluster: Formylmethionine deformylase;
n=1; Medicago truncatula|Rep: Formylmethionine
deformylase - Medicago truncatula (Barrel medic),
partial (26%)
Length = 487
Score = 141 bits (71), Expect = 7e-33
Identities = 134/155 (86%)
Strand = Plus / Plus
Query: 265 gaagttaatcccagtgagataaagtcggagagagtgcagaagatcattgatgacatgatc 324
|||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct: 319 gaagttgatcccagtgagatgaagtcggagaaggtgcagaagatcatcgatgacatgatc 378
Query: 325 cgggtcatgaggaatgctcctggggttggtttagctgctccccagattggagttccttta 384
|| |||||||||||||| ||||| |||||| | ||||| || || |||||| |||| ||
Sbjct: 379 cgtgtcatgaggaatgcacctggtgttggtctcgctgccccacaaattggacttcccttc 438
Query: 385 aggataatagttgtggaagataccaaagagtatat 419
|||||||| ||| ||||||||| ||||| |||||
Sbjct: 439 aggataattgttttggaagataaaaaagaatatat 473