Miyakogusa Predicted Gene
- Lj3g3v2174820.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2174820.1 Non Chatacterized Hit- tr|D8SWW0|D8SWW0_SELML
Putative uncharacterized protein OS=Selaginella
moelle,35.11,0.0000000003,coiled-coil,NULL; seg,NULL;
Occludin_ELL,Occludin/RNA polymerase II elongation factor, ELL
domain,CUFF.43621.1
(1287 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67890 similar to UniRef100_A7P6U5 Cluster: Chromosome... 609 e-173
gnl|LJGI|TC73476 similar to UniRef100_A7P6U5 Cluster: Chromosome... 515 e-145
gnl|LJGI|BP056243 similar to UniRef100_A7P6U5 Cluster: Chromosom... 244 1e-63
gnl|LJGI|BP075701 82 1e-14
gnl|LJGI|TC82224 62 9e-09
>gnl|LJGI|TC67890 similar to UniRef100_A7P6U5 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (11%)
Length = 692
Score = 609 bits (307), Expect = e-173
Identities = 441/486 (90%), Gaps = 6/486 (1%)
Strand = Plus / Plus
Query: 808 aaagaaagtaaaagacaaacaccttattcattggaagaggtggctgatggaggaaaggat 867
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 1 aaagaaagtaaaagacaaacacctaattcattggaagcggtggctgatggaggaaaggat 60
Query: 868 tccgtatttgccgatagaaatagtagcgatcgaaagaagagagaatcttcatcagatgaa 927
|| || ||||| | ||||||| || ||| | || ||||||||||||||| |||||||||
Sbjct: 61 tctgtgtttgcagcaagaaataatatcgaacaaaggaagagagaatcttcttcagatgaa 120
Query: 928 agtagctgttcttattcaaagtacgaaaaggatgaacctgaattgaaggagcctataatg 987
| |||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 121 aatagctgctcttgttcaaagtacgaaaaagatgaacctgaattgaaggggcctataatg 180
Query: 988 actttttcccaatatagagaatatgtacaggaatttcgtgataaatatgatagttactgc 1047
|||||||| ||||||| ||||||||| ||||| | | |||||||||||||||||||||||
Sbjct: 181 actttttcacaatataaagaatatgtgcaggagtatggtgataaatatgatagttactgc 240
Query: 1048 tccctgcacaagattttggagagttacaggaacgagtttcaaaaactaggagacaaatta 1107
|||||| ||||||||||||||||||||||||| ||||||||| |||||||||| | |||
Sbjct: 241 tccctgtacaagattttggagagttacaggaatgagtttcaacaactaggagatgattta 300
Query: 1108 gaatatgctaaaggc------atggatagatattatgacatcgtagaacagctgaaggaa 1161
| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 gtatatgctaaaggcagggatatggatagatattatgacatcttagaacagctgaaggaa 360
Query: 1162 tcctatcgtcgttgtggaccaagacacaagagactgaagaaaatatttgttgtgcttcac 1221
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 361 tcctatcgtcgttgtggaccaagacataagagactgaagaaaatatttgttgtgcttcac 420
Query: 1222 caggaactggagaatattaagcaaaggatcaaagactatgcccactcatatactaaagag 1281
|| ||||| |||||||| |||| |||||||||||||| |||||||||||||| |||||||
Sbjct: 421 caagaactagagaatatcaagctaaggatcaaagactttgcccactcatatagtaaagag 480
Query: 1282 tgaaaa 1287
||||||
Sbjct: 481 tgaaaa 486
>gnl|LJGI|TC73476 similar to UniRef100_A7P6U5 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (7%)
Length = 480
Score = 515 bits (260), Expect = e-145
Identities = 260/260 (100%)
Strand = Plus / Plus
Query: 1028 ataaatatgatagttactgctccctgcacaagattttggagagttacaggaacgagtttc 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataaatatgatagttactgctccctgcacaagattttggagagttacaggaacgagtttc 60
Query: 1088 aaaaactaggagacaaattagaatatgctaaaggcatggatagatattatgacatcgtag 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaaactaggagacaaattagaatatgctaaaggcatggatagatattatgacatcgtag 120
Query: 1148 aacagctgaaggaatcctatcgtcgttgtggaccaagacacaagagactgaagaaaatat 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aacagctgaaggaatcctatcgtcgttgtggaccaagacacaagagactgaagaaaatat 180
Query: 1208 ttgttgtgcttcaccaggaactggagaatattaagcaaaggatcaaagactatgcccact 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgttgtgcttcaccaggaactggagaatattaagcaaaggatcaaagactatgcccact 240
Query: 1268 catatactaaagagtgaaaa 1287
||||||||||||||||||||
Sbjct: 241 catatactaaagagtgaaaa 260
>gnl|LJGI|BP056243 similar to UniRef100_A7P6U5 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (6%)
Length = 445
Score = 244 bits (123), Expect = 1e-63
Identities = 211/241 (87%), Gaps = 12/241 (4%)
Strand = Plus / Minus
Query: 1059 gattttggagagttacaggaacgagtttcaaaaactaggagacaaattagaatatgctaa 1118
||||||||||||||||||||| ||||||||| |||||||||| | |||| |||||||||
Sbjct: 445 gattttggagagttacaggaatgagtttcaacaactaggagatgatttagtatatgctaa 386
Query: 1119 aggca------tggatagatattatgacatcgtagaacagctgaaggaatcctatcgtcg 1172
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 aggcagggatatggatagatattatgacatcttagaacagctgaaggaatcctatcgtcg 326
Query: 1173 ttgtggacca------agacacaagagactgaagaaaatatttgttgtgcttcaccagga 1226
||||||||| ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 325 ttgtggacccttgcagagacataagagactgaagaaaatatttgttgtgcttcacccaga 266
Query: 1227 actggagaatattaagcaaaggatcaaagactatgcccactcatatactaaagagtgaaa 1286
||| |||||||| ||| ||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 265 actagagaatatccagctaaggatccaagactttgcccactcatatagtaaagagtgaaa 206
Query: 1287 a 1287
|
Sbjct: 205 a 205
>gnl|LJGI|BP075701
Length = 274
Score = 81.8 bits (41), Expect = 1e-14
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Minus
Query: 1228 ctggagaatattaagcaaaggatcaaagacta-tgcccactcatatactaaagagtgaaa 1286
|||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 272 ctggagaatattaagccaaggatcaa-gactaatgcccactcatatactaaagagtgaaa 214
Query: 1287 a 1287
|
Sbjct: 213 a 213
>gnl|LJGI|TC82224
Length = 646
Score = 61.9 bits (31), Expect = 9e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 19 cactcaggaaaagactttcatgtgtgtgaag 49
|||||||||||||||||||||||||||||||
Sbjct: 616 cactcaggaaaagactttcatgtgtgtgaag 646