Miyakogusa Predicted Gene
- Lj3g3v2168430.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2168430.2 tr|I3SEH4|I3SEH4_LOTJA 40S ribosomal protein S12
OS=Lotus japonicus PE=2 SV=1,99.29,0,Ribosomal_L7Ae,Ribosomal protein
L7Ae/L30e/S12e/Gadd45; RIBSOMALS12E,Ribosomal protein S12e;
seg,NUL,CUFF.43949.2
(423 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62022 similar to UniRef100_Q6ZLP8 Cluster: 40S riboso... 833 0.0
gnl|LJGI|GO023319 homologue to UniRef100_A7PFT0 Cluster: 40S rib... 484 e-136
gnl|LJGI|TC60625 similar to UniRef100_Q6ZLP8 Cluster: 40S riboso... 361 2e-99
gnl|LJGI|GO025632 similar to UniRef100_Q6ZLP8 Cluster: 40S ribos... 258 2e-68
>gnl|LJGI|TC62022 similar to UniRef100_Q6ZLP8 Cluster: 40S ribosomal protein S12;
n=1; Oryza sativa Japonica Group|Rep: 40S ribosomal
protein S12 - Oryza sativa subsp. japonica (Rice),
partial (93%)
Length = 767
Score = 833 bits (420), Expect = 0.0
Identities = 420/420 (100%)
Strand = Plus / Plus
Query: 1 atgtcaggagatgaagctgcagtagtagttccggcagctgagccagcggctgtaattcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 atgtcaggagatgaagctgcagtagtagttccggcagctgagccagcggctgtaattcct 158
Query: 61 ggcgagcctatggatatcatgactgccttgcaactggtgctcagaaagtcaagggcatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ggcgagcctatggatatcatgactgccttgcaactggtgctcagaaagtcaagggcatat 218
Query: 121 ggtggtcttgcccgaggcctccatgagggtgcaaaagtgattgagaagcatgcaggacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ggtggtcttgcccgaggcctccatgagggtgcaaaagtgattgagaagcatgcaggacag 278
Query: 181 ctctgtgttctagcagaagattgcgaccagcctgactatgttaaacttgtcaaggccctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctctgtgttctagcagaagattgcgaccagcctgactatgttaaacttgtcaaggccctc 338
Query: 241 tgcgcagagcacaatgttagcctgctcactgttccaagtgcaaagacacttggagaatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgcgcagagcacaatgttagcctgctcactgttccaagtgcaaagacacttggagaatgg 398
Query: 301 gctggattgtgcaagattgattcagaaggaaaagctaggaaggtaactggctgctcctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gctggattgtgcaagattgattcagaaggaaaagctaggaaggtaactggctgctcctgt 458
Query: 361 gtggttgtcaaggattttggggaggaacatgaagcctataatgttgttctgcagcatgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gtggttgtcaaggattttggggaggaacatgaagcctataatgttgttctgcagcatgtg 518
>gnl|LJGI|GO023319 homologue to UniRef100_A7PFT0 Cluster: 40S ribosomal protein S12;
n=1; Vitis vinifera|Rep: 40S ribosomal protein S12 -
Vitis vinifera (Grape), partial (61%)
Length = 478
Score = 484 bits (244), Expect = e-136
Identities = 291/308 (94%), Gaps = 9/308 (2%)
Strand = Plus / Plus
Query: 116 catatggtggtcttgcccgaggcctccatgagggtgcaaaagtgattgagaagcatgcag 175
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 16 catatggtggtctttcccgaggcctccacgagggtgcaaaagtgattgagaagcatgctg 75
Query: 176 gacagctctgtgttctagcagaagattgcgaccagcctgactatgttaaacttgtcaagg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 gacagctctgtgttctagcagaagattgcgaccagcctgactatgttaaacttgtcaagg 135
Query: 236 ccctctgcgcagagcacaatgttagcctgctcactgttccaagtgcaaagacacttggag 295
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 136 tcctctgcgcagagcacaatgttagcctgatctctgttccaagtgcaaagacacttggag 195
Query: 296 aatgggctggattgtgcaagattgattcagaaggaaaagctaggaaggtaactggctgct 355
||||||||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 196 aatgggctgga---------attgattcagaaggaaaagctaggaaggtaagtggttgct 246
Query: 356 cctgtgtggttgtcaaggattttggggaggaacatgaagcctataatgttgttctgcagc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cctgtgtggttgtcaaggattttggggaggaacatgaagcctataatgttgttctgcagc 306
Query: 416 atgtgtaa 423
||||||||
Sbjct: 307 atgtgtaa 314
>gnl|LJGI|TC60625 similar to UniRef100_Q6ZLP8 Cluster: 40S ribosomal protein S12;
n=1; Oryza sativa Japonica Group|Rep: 40S ribosomal
protein S12 - Oryza sativa subsp. japonica (Rice),
partial (92%)
Length = 722
Score = 361 bits (182), Expect = 2e-99
Identities = 320/366 (87%)
Strand = Plus / Plus
Query: 55 attcctggcgagcctatggatatcatgactgccttgcaactggtgctcagaaagtcaagg 114
|||||||| ||||| ||||| || |||||||| ||||| || ||||| |||||||| |
Sbjct: 144 attcctggtgagccaatggacattatgactgcattgcagcttgtgctgagaaagtctctg 203
Query: 115 gcatatggtggtcttgcccgaggcctccatgagggtgcaaaagtgattgagaagcatgca 174
|| ||||| |||||||| |||| || ||||| ||||||||||| ||||| ||||||||
Sbjct: 204 gcttatggcggtcttgcaagaggtcttcatgaaggtgcaaaagttattgaaaagcatgct 263
Query: 175 ggacagctctgtgttctagcagaagattgcgaccagcctgactatgttaaacttgtcaag 234
| ||||||||||||||||||||||||||| || || || || || || ||||| || ||
Sbjct: 264 gcacagctctgtgttctagcagaagattgtgatcaacccgattacgtcaaactagtgaaa 323
Query: 235 gccctctgcgcagagcacaatgttagcctgctcactgttccaagtgcaaagacacttgga 294
||||| || ||||||||||||||||||||| | || ||| ||||||||||||| ||||||
Sbjct: 324 gccctttgtgcagagcacaatgttagcctgttgacagttgcaagtgcaaagacccttgga 383
Query: 295 gaatgggctggattgtgcaagattgattcagaaggaaaagctaggaaggtaactggctgc 354
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 384 gaatgggctggtttgtgcaagattgattcagaaggcaaagctaggaaggtaaccggttgc 443
Query: 355 tcctgtgtggttgtcaaggattttggggaggaacatgaagcctataatgttgttctgcag 414
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 444 tcctgtgtggttgtcaaggatttcggggaggaacacgaagcttataatgttgttctgcag 503
Query: 415 catgtg 420
||||||
Sbjct: 504 catgtg 509
>gnl|LJGI|GO025632 similar to UniRef100_Q6ZLP8 Cluster: 40S ribosomal protein S12;
n=1; Oryza sativa Japonica Group|Rep: 40S ribosomal
protein S12 - Oryza sativa subsp. japonica (Rice),
partial (75%)
Length = 578
Score = 258 bits (130), Expect = 2e-68
Identities = 172/186 (92%)
Strand = Plus / Plus
Query: 235 gccctctgcgcagagcacaatgttagcctgctcactgttccaagtgcaaagacacttgga 294
||||| || ||||||||||||||||||||| | || ||| ||||||||||||| ||||||
Sbjct: 248 gccctttgtgcagagcacaatgttagcctgttgacagttgcaagtgcaaagacccttgga 307
Query: 295 gaatgggctggattgtgcaagattgattcagaaggaaaagctaggaaggtaactggctgc 354
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 308 gaatgggctggtttgtgcaagattgattcagaaggcaaagctaggaaggtaaccggttgc 367
Query: 355 tcctgtgtggttgtcaaggattttggggaggaacatgaagcctataatgttgttctgcag 414
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 368 tcctgtgtggttgtcaaggatttcggggaggaacacgaagcttataatgttgttctgcag 427
Query: 415 catgtg 420
||||||
Sbjct: 428 catgtg 433