Miyakogusa Predicted Gene

Lj3g3v2074860.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v2074860.1 tr|B9HZ13|B9HZ13_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_567987 PE=4
SV=1,25.74,0.00000000000008,seg,NULL; F-box domain,F-box domain,
cyclin-like; no description,NULL; FAMILY NOT NAMED,NULL;
F-box,,CUFF.43551.1
         (1141 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW624111 UniRef100_Q0J0J3 Cluster: Os09g0497600 protein...   543   e-154
gnl|LJGI|BP050917                                                     157   2e-37

>gnl|LJGI|BW624111 UniRef100_Q0J0J3 Cluster: Os09g0497600 protein; n=1; Oryza sativa
           Japonica Group|Rep: Os09g0497600 protein - Oryza sativa
           subsp. japonica (Rice), partial (13%)
          Length = 484

 Score =  543 bits (274), Expect = e-154
 Identities = 277/278 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctgatatctcatctggaaaaccctcactcagcaacatcaaccatttttcagatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atggctgatatctcatctggaaaaccctcactcagcaacatcaaccatttttcagatgat 266

                                                                       
Query: 61  ttgttagtagaaattttcatccgattgccattcagatccatcgctggatgcaaatgcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttgttagtagaaattttcatccgattgccattcagatccatcgctggatgcaaatgcacc 326

                                                                       
Query: 121 tccaagcgttggttagatttgatttcatccccaattttcatacaacaatttatcactcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tccaagcgttggttagatttgatttcatccccaattttcatacaacaatttatcactcgt 386

                                                                       
Query: 181 cagaacaatctcttcaatgctttcttgatcttcctcacaccccatgagcttatgctaggt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 387 cagaacaatctcttcaatgctttcttgatcttcctcacgccccatgagcttatgctaggt 446

                                                 
Query: 241 ttcatcaccccagatgatgatccacctctcatcccaga 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttcatcaccccagatgatgatccacctctcatcccaga 484


>gnl|LJGI|BP050917 
          Length = 290

 Score =  157 bits (79), Expect = 2e-37
 Identities = 79/79 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1063 gggactgatgaatttgaggctattcctggttatgagaaatctgatataagtccctttcaa 1122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290  gggactgatgaatttgaggctattcctggttatgagaaatctgatataagtccctttcaa 231

                               
Query: 1123 ctagtgtttccattgtagc 1141
            |||||||||||||||||||
Sbjct: 230  ctagtgtttccattgtagc 212