Miyakogusa Predicted Gene
- Lj3g3v2004940.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2004940.1 Non Chatacterized Hit- tr|D7U8E8|D7U8E8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,49.33,0.00000000001,zf-LSD1,Zinc finger, LSD1-type; FAMILY NOT
NAMED,NULL; seg,NULL; LSD1: zinc finger domain, LSD1 subc,CUFF.43519.1
(441 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61295 homologue to UniRef100_Q93ZB1 Cluster: At1g3254... 874 0.0
gnl|LJGI|GO012271 homologue to UniRef100_Q93ZB1 Cluster: At1g325... 513 e-145
gnl|LJGI|BP049974 homologue to UniRef100_Q53UG6 Cluster: LSD-One... 357 4e-98
gnl|LJGI|GO021521 homologue to UniRef100_Q53UG6 Cluster: LSD-One... 287 3e-77
gnl|LJGI|DC595206 homologue to UniRef100_Q53UG6 Cluster: LSD-One... 212 1e-54
gnl|LJGI|BP070541 similar to UniRef100_Q4QJA1 Cluster: Methyltra... 86 2e-16
>gnl|LJGI|TC61295 homologue to UniRef100_Q93ZB1 Cluster: At1g32540/T9G5_1; n=1;
Arabidopsis thaliana|Rep: At1g32540/T9G5_1 - Arabidopsis
thaliana (Mouse-ear cress), partial (88%)
Length = 858
Score = 874 bits (441), Expect = 0.0
Identities = 441/441 (100%)
Strand = Plus / Plus
Query: 1 atgccagttccacttgccccctaccctactccaccagctccatacacaccaccaacaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 atgccagttccacttgccccctaccctactccaccagctccatacacaccaccaacaaac 272
Query: 61 ggtgcacagagtcaacttgtgtgttctgggtgtagaaaccttctagtctatccagttgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggtgcacagagtcaacttgtgtgttctgggtgtagaaaccttctagtctatccagttgga 332
Query: 121 gccacctctgtgtgctgtgcagtttgcaatgcagtcacatcagtgccacctcctggcaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gccacctctgtgtgctgtgcagtttgcaatgcagtcacatcagtgccacctcctggcaca 392
Query: 181 gaaatggcccagttagtttgtggaggttgccacactttactcatgtacatccggggagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gaaatggcccagttagtttgtggaggttgccacactttactcatgtacatccggggagct 452
Query: 241 acaagtgtgcaatgctcttgttgccacacggtcaatctagctttggaagcaaatcaggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 acaagtgtgcaatgctcttgttgccacacggtcaatctagctttggaagcaaatcaggta 512
Query: 301 gcacatgtcaattgtgggaactgcagaatgctcctcatgtaccaatatggagcaagatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gcacatgtcaattgtgggaactgcagaatgctcctcatgtaccaatatggagcaagatcc 572
Query: 361 gtaaaatgtgcagtttgcaattttgtaacctcagttgggacctcagcaagcaccactgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gtaaaatgtgcagtttgcaattttgtaacctcagttgggacctcagcaagcaccactgaa 632
Query: 421 cagaagttcagtacctaaaac 441
|||||||||||||||||||||
Sbjct: 633 cagaagttcagtacctaaaac 653
>gnl|LJGI|GO012271 homologue to UniRef100_Q93ZB1 Cluster: At1g32540/T9G5_1; n=1;
Arabidopsis thaliana|Rep: At1g32540/T9G5_1 - Arabidopsis
thaliana (Mouse-ear cress), partial (64%)
Length = 747
Score = 513 bits (259), Expect = e-145
Identities = 266/267 (99%), Gaps = 1/267 (0%)
Strand = Plus / Plus
Query: 175 ggcacagaaatggcccagttagtttgtggaggttgccacactttactcatgtacatccgg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggcacagaaatggcccagttagtttgtggaggttgccacactttactcatgtacatccgg 322
Query: 235 ggagctacaagtgtgcaatgctcttgttgccacacggtcaatctagctttggaagcaaat 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggagctacaagtgtgcaatgctcttgttgccacacggtcaatctagctttggaagcaaat 382
Query: 295 caggtagcacatgtcaattgtgggaactgcagaatgctcctcatgtaccaatatggagca 354
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caggtagcacatgtcaattgt-ggaactgcagaatgctcctcatgtaccaatatggagca 441
Query: 355 agatccgtaaaatgtgcagtttgcaattttgtaacctcagttgggacctcagcaagcacc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agatccgtaaaatgtgcagtttgcaattttgtaacctcagttgggacctcagcaagcacc 501
Query: 415 actgaacagaagttcagtacctaaaac 441
|||||||||||||||||||||||||||
Sbjct: 502 actgaacagaagttcagtacctaaaac 528
Score = 125 bits (63), Expect = 2e-28
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1 atgccagttccacttgccccctaccctactccaccagctccatacacaccaccaacaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 atgccagttccacttgccccctaccctactccaccagctccatacacaccaccaacaaac 196
Query: 61 ggt 63
|||
Sbjct: 197 ggt 199
>gnl|LJGI|BP049974 homologue to UniRef100_Q53UG6 Cluster: LSD-One-Like 1; n=1;
Brassica rapa|Rep: LSD-One-Like 1 - Brassica campestris
(Field mustard), partial (65%)
Length = 592
Score = 357 bits (180), Expect = 4e-98
Identities = 290/326 (88%), Gaps = 3/326 (0%)
Strand = Plus / Plus
Query: 1 atgccagttccacttgccccctaccctactccacc---agctccatacacaccaccaaca 57
|||||||||||||||||||||||||| || |||| ||||| |||||||| | ||
Sbjct: 263 atgccagttccacttgccccctacccaacaacacccccagctctatacacacatgcgcca 322
Query: 58 aacggtgcacagagtcaacttgtgtgttctgggtgtagaaaccttctagtctatccagtt 117
|| |||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||
Sbjct: 323 aatggtgcacagagtcaacttgtctgttccgggtgtagaaaccttctgctatatccagtt 382
Query: 118 ggagccacctctgtgtgctgtgcagtttgcaatgcagtcacatcagtgccacctcctggc 177
||||||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct: 383 ggagccaccactgtgtgctgtgctgtttgcaatgcagtcacagcagttccacctcctggc 442
Query: 178 acagaaatggcccagttagtttgtggaggttgccacactttactcatgtacatccgggga 237
||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||
Sbjct: 443 acagaaatggcccagttagtttgtggaggctgtcacactttgatcatgtacatccgcggc 502
Query: 238 gctacaagtgtgcaatgctcttgttgccacacggtcaatctagctttggaagcaaatcag 297
|| |||||||| |||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct: 503 gccacaagtgttcaatgctcttgttgtcacacggtgaacctagctttggaagcaaatcag 562
Query: 298 gtagcacatgtcaattgtgggaactg 323
|| ||||||||| | |||||||||||
Sbjct: 563 gtggcacatgtccactgtgggaactg 588
>gnl|LJGI|GO021521 homologue to UniRef100_Q53UG6 Cluster: LSD-One-Like 1; n=1;
Brassica rapa|Rep: LSD-One-Like 1 - Brassica campestris
(Field mustard), partial (53%)
Length = 731
Score = 287 bits (145), Expect = 3e-77
Identities = 256/291 (87%), Gaps = 4/291 (1%)
Strand = Plus / Plus
Query: 1 atgccagttccacttgccccctaccctactccacc---agctccatacacaccaccaaca 57
|||||||||||||||||||||||||| || |||| ||||| |||||||| | ||
Sbjct: 442 atgccagttccacttgccccctacccaacaacacccccagctctatacacacatgcgcca 501
Query: 58 aacggtgcacagagtcaacttgtgtgttctgggtgtagaaaccttctagtctatccagtt 117
|| ||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||
Sbjct: 502 aatggtgcacagagtcaacttgcctgttccgggtgtagaaaccttctgctatatccagtt 561
Query: 118 ggagccacctctgtgtgctgtgcagtttgcaatgcagtcacatcagtgccacctcctggc 177
||||||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct: 562 ggagccaccactgtgtgctgtgctgtttgcaatgcagtcacagcagttccacctcctggc 621
Query: 178 acagaaatggcccagttagtttgtggaggttgccacactttactcatgtacatccgggga 237
||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||
Sbjct: 622 acagaaatggcccagttagtttgtggaggctgtcacactttgatcatgtacatccgcggc 681
Query: 238 gctacaagtgtgcaatgctcttgttgccacacggtcaatctagctttggaa 288
|| |||||||| |||||||||||||| ||||| || || ||||||||||||
Sbjct: 682 gccacaagtgttcaatgctcttgttgtcacac-gtgaacctagctttggaa 731
>gnl|LJGI|DC595206 homologue to UniRef100_Q53UG6 Cluster: LSD-One-Like 1; n=1;
Brassica rapa|Rep: LSD-One-Like 1 - Brassica campestris
(Field mustard), partial (25%)
Length = 396
Score = 212 bits (107), Expect = 1e-54
Identities = 113/115 (98%)
Strand = Plus / Plus
Query: 175 ggcacagaaatggcccagttagtttgtggaggttgccacactttactcatgtacatccgg 234
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggcacagggatggcccagttagtttgtggaggttgccacactttactcatgtacatccgg 180
Query: 235 ggagctacaagtgtgcaatgctcttgttgccacacggtcaatctagctttggaag 289
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggagctacaagtgtgcaatgctcttgttgccacacggtcaatctagctttggaag 235
>gnl|LJGI|BP070541 similar to UniRef100_Q4QJA1 Cluster: Methyltransferase-like
protein; n=1; Leishmania major|Rep:
Methyltransferase-like protein, partial (2%)
Length = 394
Score = 85.7 bits (43), Expect = 2e-16
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 399 gacctcagcaagcaccactgaacagaagttcagtacctaaaac 441
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gacctcagcaagcaccactgaacagaagttcagtacctaaaac 211