Miyakogusa Predicted Gene
- Lj3g3v1981280.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1981280.1 Non Chatacterized Hit- tr|H3DBX9|H3DBX9_TETNG
Uncharacterized protein (Fragment) OS=Tetraodon
nigrov,39.76,2e-18,Smg4_UPF3,Regulator of nonsense-mediated decay,
UPF3; UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PR,CUFF.43387.1
(1611 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61736 1455 0.0
gnl|LJGI|TC68951 homologue to UniRef100_A9DBP8 Cluster: Bacterio... 628 e-179
>gnl|LJGI|TC61736
Length = 809
Score = 1455 bits (734), Expect = 0.0
Identities = 734/734 (100%)
Strand = Plus / Plus
Query: 1 atgaaggttcgttcggaaagggaaagaaccaaagtggtgattaggcatttacctccatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 atgaaggttcgttcggaaagggaaagaaccaaagtggtgattaggcatttacctccatct 135
Query: 61 ctcactcattctgatctcatccaacaaatcgataaccacttcgcttctcgctacaattgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ctcactcattctgatctcatccaacaaatcgataaccacttcgcttctcgctacaattgg 195
Query: 121 ttctcttttcgccccggcaacaccagtcacaagcatcagagatattcccgagcttatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttctcttttcgccccggcaacaccagtcacaagcatcagagatattcccgagcttatatt 255
Query: 181 gacttcaagcaccctaatgatgttttcgagttcgctgaattctttcatggccatgttttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gacttcaagcaccctaatgatgttttcgagttcgctgaattctttcatggccatgttttt 315
Query: 241 gtgaacgaaaaaggtgcccagcataaagcattggttgagtacgcaccttctcaacgtgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtgaacgaaaaaggtgcccagcataaagcattggttgagtacgcaccttctcaacgtgtt 375
Query: 301 ccgaagccaggtaccaaaaaggatggtcgtgaagggtctatatacaaagatccagactat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ccgaagccaggtaccaaaaaggatggtcgtgaagggtctatatacaaagatccagactat 435
Query: 361 cttgagttcctcaaactcattgcaaaacctgaagaacatcttcctagcgcagaaatacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cttgagttcctcaaactcattgcaaaacctgaagaacatcttcctagcgcagaaatacaa 495
Query: 421 ttggaaagaagggaagctgagcaagccggggctaacaaggaaccacccgttgtcacaccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttggaaagaagggaagctgagcaagccggggctaacaaggaaccacccgttgtcacaccc 555
Query: 481 cttatggaatatgttcgtcagaaacgtgctcttggtagtggtgtgcaggtttcatcagca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cttatggaatatgttcgtcagaaacgtgctcttggtagtggtgtgcaggtttcatcagca 615
Query: 541 gcaacaaaaattagcagaagagctagagctgctttgccaggcaagcctggctctggtaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gcaacaaaaattagcagaagagctagagctgctttgccaggcaagcctggctctggtaat 675
Query: 601 gctaaacggggatctgagaagaaaaagtatgttcagaaggacaatgccaagattgctaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gctaaacggggatctgagaagaaaaagtatgttcagaaggacaatgccaagattgctaat 735
Query: 661 cggaaagagttgcgagacaagtcagcctttattgcggtaccgcgccgagaggatcaatct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cggaaagagttgcgagacaagtcagcctttattgcggtaccgcgccgagaggatcaatct 795
Query: 721 gctgaatcaagtgc 734
||||||||||||||
Sbjct: 796 gctgaatcaagtgc 809
>gnl|LJGI|TC68951 homologue to UniRef100_A9DBP8 Cluster: Bacterioferritin subunit 2;
n=1; Shewanella benthica KT99|Rep: Bacterioferritin
subunit 2 - Shewanella benthica KT99, partial (10%)
Length = 881
Score = 628 bits (317), Expect = e-179
Identities = 330/333 (99%), Gaps = 1/333 (0%)
Strand = Plus / Plus
Query: 1279 tctgatgtttcacattctggtaatgagcacccatcatcctcatggtcgcaaactactctg 1338
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 7 tctgatgtttcacattctggtaatgagtacccatcatc-tcatggtcgcaaactactctg 65
Query: 1339 tcaaatcctgaatcagttgaaggagaagtaaaagaaagtgttccttcaggaaataggagt 1398
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tcaaatcgtgaatcagttgaaggagaagtaaaagaaagtgttccttcaggaaataggagt 125
Query: 1399 ccagaattctcagcttctgcagttgggcgtggcagtccttctgttgagaatggttctcaa 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ccagaattctcagcttctgcagttgggcgtggcagtccttctgttgagaatggttctcaa 185
Query: 1459 agaaattttactcgccgtggagcttcctatatagtgaaggatgaaggtgcagtgagtttg 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 agaaattttactcgccgtggagcttcctatatagtgaaggatgaaggtgcagtgagtttg 245
Query: 1519 agtgaaggtaaaccttccaagaaaggtgttgctgggaatagtgctcatgagaaacaagtt 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 agtgaaggtaaaccttccaagaaaggtgttgctgggaatagtgctcatgagaaacaagtt 305
Query: 1579 tgggtacagaaatcatcttccgggtcttaaaat 1611
|||||||||||||||||||||||||||||||||
Sbjct: 306 tgggtacagaaatcatcttccgggtcttaaaat 338