Miyakogusa Predicted Gene
- Lj3g3v1981160.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1981160.1 tr|A4RTR8|A4RTR8_OSTLU Predicted protein
(Fragment) OS=Ostreococcus lucimarinus (strain CCE9901)
GN=,54.65,6e-19,RNA recognition motif,RNA recognition motif domain;
RRM,RNA recognition motif domain; SPLICING FACTO,TC76613.path1.1
(342 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76613 similar to UniRef100_A7PUY1 Cluster: Chromosome... 674 0.0
gnl|LJGI|BP078574 519 e-147
gnl|LJGI|TC79958 similar to UniRef100_A7PUY1 Cluster: Chromosome... 379 e-105
gnl|LJGI|FS355729 similar to UniRef100_A9TN58 Cluster: Predicted... 70 1e-11
gnl|LJGI|TC73464 similar to UniRef100_Q9FYW5 Cluster: BAC19.11; ... 50 9e-06
>gnl|LJGI|TC76613 similar to UniRef100_A7PUY1 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 451
Score = 674 bits (340), Expect = 0.0
Identities = 340/340 (100%)
Strand = Plus / Plus
Query: 1 atggctgaacacgaagaagaggttcacaattctcatccacacgccgattcctctcctcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 atggctgaacacgaagaagaggttcacaattctcatccacacgccgattcctctcctcct 171
Query: 61 ccacctgccaccgacgccaattctcatgctacacggcatgctaggcgggtgaatgttgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ccacctgccaccgacgccaattctcatgctacacggcatgctaggcgggtgaatgttgag 231
Query: 121 gaccttcctcctacagccaatgagcagtcagttgcaactttctttagtcaagttatggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gaccttcctcctacagccaatgagcagtcagttgcaactttctttagtcaagttatggcc 291
Query: 181 aatattgggggaaacactgctggcccaggtgatgctgtagtcaatgtttgcattaaccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aatattgggggaaacactgctggcccaggtgatgctgtagtcaatgtttgcattaaccat 351
Query: 241 gacatgaatttcgctttcgtggagatgaggtctgttgaggaagctagcaatgctatggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gacatgaatttcgctttcgtggagatgaggtctgttgaggaagctagcaatgctatggct 411
Query: 301 ttagatgggattatttttgagggggcacctgttaaggtca 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttagatgggattatttttgagggggcacctgttaaggtca 451
>gnl|LJGI|BP078574
Length = 493
Score = 519 bits (262), Expect = e-147
Identities = 262/262 (100%)
Strand = Plus / Minus
Query: 1 atggctgaacacgaagaagaggttcacaattctcatccacacgccgattcctctcctcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atggctgaacacgaagaagaggttcacaattctcatccacacgccgattcctctcctcct 211
Query: 61 ccacctgccaccgacgccaattctcatgctacacggcatgctaggcgggtgaatgttgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ccacctgccaccgacgccaattctcatgctacacggcatgctaggcgggtgaatgttgag 151
Query: 121 gaccttcctcctacagccaatgagcagtcagttgcaactttctttagtcaagttatggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gaccttcctcctacagccaatgagcagtcagttgcaactttctttagtcaagttatggcc 91
Query: 181 aatattgggggaaacactgctggcccaggtgatgctgtagtcaatgtttgcattaaccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 aatattgggggaaacactgctggcccaggtgatgctgtagtcaatgtttgcattaaccat 31
Query: 241 gacatgaatttcgctttcgtgg 262
||||||||||||||||||||||
Sbjct: 30 gacatgaatttcgctttcgtgg 9
>gnl|LJGI|TC79958 similar to UniRef100_A7PUY1 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (49%)
Length = 877
Score = 379 bits (191), Expect = e-105
Identities = 239/255 (93%)
Strand = Plus / Plus
Query: 88 gctacacggcatgctaggcgggtgaatgttgaggaccttcctcctacagccaatgagcag 147
|||||| ||||||||||||| ||| |||||| || |||||||||||||||||||||||||
Sbjct: 510 gctacaaggcatgctaggcgagtgtatgttgggggccttcctcctacagccaatgagcag 569
Query: 148 tcagttgcaactttctttagtcaagttatggccaatattgggggaaacactgctggccca 207
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct: 570 tcagttgcaactttctttagccaagttatggccaagattgggggaaacactgctggtcca 629
Query: 208 ggtgatgctgtagtcaatgtttgcattaaccatgacatgaatttcgctttcgtggagatg 267
|||||||| || |||||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 630 ggtgatgcggtggtcaatgtttacattaaccatgacaaaaagttcgcttttgtggagatg 689
Query: 268 aggtctgttgaggaagctagcaatgctatggctttagatgggattatttttgagggggca 327
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aggtctgttgaagaagctagcaatgctatggctttagatgggattatttttgagggggca 749
Query: 328 cctgttaaggtcagg 342
|||||||||||||||
Sbjct: 750 cctgttaaggtcagg 764
>gnl|LJGI|FS355729 similar to UniRef100_A9TN58 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(29%)
Length = 763
Score = 69.9 bits (35), Expect = 1e-11
Identities = 137/171 (80%)
Strand = Plus / Minus
Query: 141 tgagcagtcagttgcaactttctttagtcaagttatggccaatattgggggaaacactgc 200
|||||||||| ||||||| ||||| || || || ||| | |||||||||||| ||||
Sbjct: 763 tgagcagtcaattgcaacattcttcagccatgtcatgactgctattgggggaaattctgc 704
Query: 201 tggcccaggtgatgctgtagtcaatgtttgcattaaccatgacatgaatttcgctttcgt 260
||| |||||||| |||| |||||||| | ||| || ||||| | ||| || || || |
Sbjct: 703 tggagcaggtgattctgttgtcaatgtctacatcaatcatgagaagaaatttgcatttct 644
Query: 261 ggagatgaggtctgttgaggaagctagcaatgctatggctttagatgggat 311
||| |||||| ||||||| |||||||| ||||| ||| | |||||||||||
Sbjct: 643 ggaaatgaggactgttgaagaagctagtaatgcaatgtcattagatgggat 593
>gnl|LJGI|TC73464 similar to UniRef100_Q9FYW5 Cluster: BAC19.11; n=1; Solanum
lycopersicum|Rep: BAC19.11 - Solanum lycopersicum
(Tomato) (Lycopersicon esculentum), partial (24%)
Length = 822
Score = 50.1 bits (25), Expect = 9e-06
Identities = 60/71 (84%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 11 acgaagaagaggttcaca---attctcatccacacgccgattcctctcctcctccacctg 67
|||||||||||||||||| | |||||| | ||||||||||||||||| | ||||| |
Sbjct: 99 acgaagaagaggttcacatcaactctcatgctcacgccgattcctctccgcaaccaccgg 158
Query: 68 ccaccgacgcc 78
|| ||||||||
Sbjct: 159 ccgccgacgcc 169