Miyakogusa Predicted Gene
- Lj3g3v1933050.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1933050.2 tr|A8HSE8|A8HSE8_CHLRE HMGB protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_187927 PE=4
SV=1,41.58,2e-17,FAMILY NOT NAMED,NULL; no description,ARID/BRIGHT
DNA-binding domain; no description,High mobility g,CUFF.43316.2
(1017 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63876 weakly similar to UniRef100_A7QQE8 Cluster: Chr... 1427 0.0
gnl|LJGI|TC58631 weakly similar to UniRef100_A7QQE8 Cluster: Chr... 1322 0.0
gnl|LJGI|FS328159 weakly similar to UniRef100_A7QQE8 Cluster: Ch... 1225 0.0
gnl|LJGI|FS334322 weakly similar to UniRef100_A7QQE8 Cluster: Ch... 991 0.0
gnl|LJGI|TC68973 homologue to UniRef100_Q8GRY7 Cluster: BZIP wit... 113 2e-24
gnl|LJGI|TC66492 weakly similar to UniRef100_A9RCM0 Cluster: Pre... 54 2e-06
>gnl|LJGI|TC63876 weakly similar to UniRef100_A7QQE8 Cluster: Chromosome undetermined
scaffold_142, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_142, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(56%)
Length = 969
Score = 1427 bits (720), Expect = 0.0
Identities = 723/724 (99%)
Strand = Plus / Plus
Query: 294 atggaaggaagtgattctggcttttaagttccgagataccataaccagcgcatcatttat 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 atggaaggaagtgattctggcttttaagttccgagataccataaccagcgcatcatttat 61
Query: 354 ggtgcgcaggtactatttatcgttgctttatcactttgagcaagtatattattttcggaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ggtgcgcaggtactatttatcgttgctttatcactttgagcaagtatattattttcggaa 121
Query: 414 gcaagtccctccttcctcaacacctgaccctggcaataggagccttgccaatagctccac 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gcaagtccctccttcctcaacacctgaccctggcaataggagccttgccaatagctccac 181
Query: 474 acccattagggaaggtgctgctgtgaatgatatacctgttcaggttagtccagcacagac 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gcccattagggaaggtgctgctgtgaatgatatacctgttcaggttagtccagcacagac 241
Query: 534 acctggttctgtggtgcctggaacaattgatgggaacctaaatgcagttagtccagtacc 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acctggttctgtggtgcctggaacaattgatgggaacctaaatgcagttagtccagtacc 301
Query: 594 aacacctggttctgtggtgcctggaacaattgatgggaaatttgatggtgggtatatagt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aacacctggttctgtggtgcctggaacaattgatgggaaatttgatggtgggtatatagt 361
Query: 654 tacagtgagcctgggttctgaacaggtgaaaggtatcctgtatcatgttcctgacaatgt 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tacagtgagcctgggttctgaacaggtgaaaggtatcctgtatcatgttcctgacaatgt 421
Query: 714 gtctcagagttcttatgctgaaggcatgcctagttcgcgaaagaaatcaaaatcggcatt 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gtctcagagttcttatgctgaaggcatgcctagttcgcgaaagaaatcaaaatcggcatt 481
Query: 774 acgtgatccatctctaccaaagtcgaacaggagtggttacaatttcttctttgctgagaa 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acgtgatccatctctaccaaagtcgaacaggagtggttacaatttcttctttgctgagaa 541
Query: 834 ttatgccaggctaaggccctcatttcaagggcaagagaaagaaattagtaagaggattgg 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttatgccaggctaaggccctcatttcaagggcaagagaaagaaattagtaagaggattgg 601
Query: 894 gtttctgtggagcaatctgtctgaagcagaaagacaggtttatcaggataaagcactgag 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gtttctgtggagcaatctgtctgaagcagaaagacaggtttatcaggataaagcactgag 661
Query: 954 agataaggaaagataccagactggaatgcaagagtacaaatccaatcatccagctcctca 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 agataaggaaagataccagactggaatgcaagagtacaaatccaatcatccagctcctca 721
Query: 1014 gtag 1017
||||
Sbjct: 722 gtag 725
>gnl|LJGI|TC58631 weakly similar to UniRef100_A7QQE8 Cluster: Chromosome undetermined
scaffold_142, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_142,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (39%)
Length = 877
Score = 1322 bits (667), Expect = 0.0
Identities = 667/667 (100%)
Strand = Plus / Plus
Query: 57 tcatcagcttcagaatgttggaaacggaaatgccaacccttaccctccgccaaccgctct 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tcatcagcttcagaatgttggaaacggaaatgccaacccttaccctccgccaaccgctct 269
Query: 117 ctaccaggacctcactcgtgatgccaatctcttctgggagaaccttcaatcttttcacaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctaccaggacctcactcgtgatgccaatctcttctgggagaaccttcaatcttttcacaa 329
Query: 177 atcattcggcaccaaatttaaggttcctactataggaggaaagccgctagatctatatcg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atcattcggcaccaaatttaaggttcctactataggaggaaagccgctagatctatatcg 389
Query: 237 cctttttatagaagtaacatctcgtggtggtcttgaaaaggtacttgacgatcgtaaatg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cctttttatagaagtaacatctcgtggtggtcttgaaaaggtacttgacgatcgtaaatg 449
Query: 297 gaaggaagtgattctggcttttaagttccgagataccataaccagcgcatcatttatggt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gaaggaagtgattctggcttttaagttccgagataccataaccagcgcatcatttatggt 509
Query: 357 gcgcaggtactatttatcgttgctttatcactttgagcaagtatattattttcggaagca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gcgcaggtactatttatcgttgctttatcactttgagcaagtatattattttcggaagca 569
Query: 417 agtccctccttcctcaacacctgaccctggcaataggagccttgccaatagctccacacc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agtccctccttcctcaacacctgaccctggcaataggagccttgccaatagctccacacc 629
Query: 477 cattagggaaggtgctgctgtgaatgatatacctgttcaggttagtccagcacagacacc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cattagggaaggtgctgctgtgaatgatatacctgttcaggttagtccagcacagacacc 689
Query: 537 tggttctgtggtgcctggaacaattgatgggaacctaaatgcagttagtccagtaccaac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tggttctgtggtgcctggaacaattgatgggaacctaaatgcagttagtccagtaccaac 749
Query: 597 acctggttctgtggtgcctggaacaattgatgggaaatttgatggtgggtatatagttac 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 acctggttctgtggtgcctggaacaattgatgggaaatttgatggtgggtatatagttac 809
Query: 657 agtgagcctgggttctgaacaggtgaaaggtatcctgtatcatgttcctgacaatgtgtc 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 agtgagcctgggttctgaacaggtgaaaggtatcctgtatcatgttcctgacaatgtgtc 869
Query: 717 tcagagt 723
|||||||
Sbjct: 870 tcagagt 876
>gnl|LJGI|FS328159 weakly similar to UniRef100_A7QQE8 Cluster: Chromosome undetermined
scaffold_142, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_142,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (43%)
Length = 794
Score = 1225 bits (618), Expect = 0.0
Identities = 618/618 (100%)
Strand = Plus / Plus
Query: 57 tcatcagcttcagaatgttggaaacggaaatgccaacccttaccctccgccaaccgctct 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tcatcagcttcagaatgttggaaacggaaatgccaacccttaccctccgccaaccgctct 236
Query: 117 ctaccaggacctcactcgtgatgccaatctcttctgggagaaccttcaatcttttcacaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ctaccaggacctcactcgtgatgccaatctcttctgggagaaccttcaatcttttcacaa 296
Query: 177 atcattcggcaccaaatttaaggttcctactataggaggaaagccgctagatctatatcg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 atcattcggcaccaaatttaaggttcctactataggaggaaagccgctagatctatatcg 356
Query: 237 cctttttatagaagtaacatctcgtggtggtcttgaaaaggtacttgacgatcgtaaatg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cctttttatagaagtaacatctcgtggtggtcttgaaaaggtacttgacgatcgtaaatg 416
Query: 297 gaaggaagtgattctggcttttaagttccgagataccataaccagcgcatcatttatggt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gaaggaagtgattctggcttttaagttccgagataccataaccagcgcatcatttatggt 476
Query: 357 gcgcaggtactatttatcgttgctttatcactttgagcaagtatattattttcggaagca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gcgcaggtactatttatcgttgctttatcactttgagcaagtatattattttcggaagca 536
Query: 417 agtccctccttcctcaacacctgaccctggcaataggagccttgccaatagctccacacc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agtccctccttcctcaacacctgaccctggcaataggagccttgccaatagctccacacc 596
Query: 477 cattagggaaggtgctgctgtgaatgatatacctgttcaggttagtccagcacagacacc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cattagggaaggtgctgctgtgaatgatatacctgttcaggttagtccagcacagacacc 656
Query: 537 tggttctgtggtgcctggaacaattgatgggaacctaaatgcagttagtccagtaccaac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tggttctgtggtgcctggaacaattgatgggaacctaaatgcagttagtccagtaccaac 716
Query: 597 acctggttctgtggtgcctggaacaattgatgggaaatttgatggtgggtatatagttac 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 acctggttctgtggtgcctggaacaattgatgggaaatttgatggtgggtatatagttac 776
Query: 657 agtgagcctgggttctga 674
||||||||||||||||||
Sbjct: 777 agtgagcctgggttctga 794
Score = 163 bits (82), Expect = 3e-39
Identities = 100/106 (94%)
Strand = Plus / Plus
Query: 89 ccaacccttaccctccgccaaccgctctctaccaggacctcactcgtgatgccaatctct 148
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 34 ccaacccttaccttccgccaaccgctctctaccagaacctcactcgtgatgccaatctct 93
Query: 149 tctgggagaaccttcaatcttttcacaaatcattcggcaccaaatt 194
| |||||||| |||| |||||||||||||||||||| |||||||||
Sbjct: 94 tttgggagaagcttcgatcttttcacaaatcattcgacaccaaatt 139
>gnl|LJGI|FS334322 weakly similar to UniRef100_A7QQE8 Cluster: Chromosome undetermined
scaffold_142, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_142, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(38%)
Length = 781
Score = 991 bits (500), Expect = 0.0
Identities = 500/500 (100%)
Strand = Plus / Plus
Query: 518 ttagtccagcacagacacctggttctgtggtgcctggaacaattgatgggaacctaaatg 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttagtccagcacagacacctggttctgtggtgcctggaacaattgatgggaacctaaatg 262
Query: 578 cagttagtccagtaccaacacctggttctgtggtgcctggaacaattgatgggaaatttg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cagttagtccagtaccaacacctggttctgtggtgcctggaacaattgatgggaaatttg 322
Query: 638 atggtgggtatatagttacagtgagcctgggttctgaacaggtgaaaggtatcctgtatc 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atggtgggtatatagttacagtgagcctgggttctgaacaggtgaaaggtatcctgtatc 382
Query: 698 atgttcctgacaatgtgtctcagagttcttatgctgaaggcatgcctagttcgcgaaaga 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atgttcctgacaatgtgtctcagagttcttatgctgaaggcatgcctagttcgcgaaaga 442
Query: 758 aatcaaaatcggcattacgtgatccatctctaccaaagtcgaacaggagtggttacaatt 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aatcaaaatcggcattacgtgatccatctctaccaaagtcgaacaggagtggttacaatt 502
Query: 818 tcttctttgctgagaattatgccaggctaaggccctcatttcaagggcaagagaaagaaa 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcttctttgctgagaattatgccaggctaaggccctcatttcaagggcaagagaaagaaa 562
Query: 878 ttagtaagaggattgggtttctgtggagcaatctgtctgaagcagaaagacaggtttatc 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttagtaagaggattgggtttctgtggagcaatctgtctgaagcagaaagacaggtttatc 622
Query: 938 aggataaagcactgagagataaggaaagataccagactggaatgcaagagtacaaatcca 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aggataaagcactgagagataaggaaagataccagactggaatgcaagagtacaaatcca 682
Query: 998 atcatccagctcctcagtag 1017
||||||||||||||||||||
Sbjct: 683 atcatccagctcctcagtag 702
Score = 163 bits (82), Expect = 3e-39
Identities = 100/106 (94%)
Strand = Plus / Plus
Query: 89 ccaacccttaccctccgccaaccgctctctaccaggacctcactcgtgatgccaatctct 148
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 94 ccaacccttaccttccgccaaccgctctctaccagaacctcactcgtgatgccaatctct 153
Query: 149 tctgggagaaccttcaatcttttcacaaatcattcggcaccaaatt 194
| |||||||| |||| |||||||||||||||||||| |||||||||
Sbjct: 154 tttgggagaagcttcgatcttttcacaaatcattcgacaccaaatt 199
Score = 81.8 bits (41), Expect = 8e-15
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 517 gttagtccagcacagacacctggttctgtggtgcctggaacaattgatgggaa 569
|||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttagtccagtaccaacacctggttctgtggtgcctggaacaattgatgggaa 317
>gnl|LJGI|TC68973 homologue to UniRef100_Q8GRY7 Cluster: BZIP with a Ring-finger
motif; n=1; Lotus japonicus|Rep: BZIP with a Ring-finger
motif - Lotus japonicus, partial (7%)
Length = 863
Score = 113 bits (57), Expect = 2e-24
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 930 ggtttatcaggataaagcactgagagataaggaaagataccagactggaatgcaaga 986
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ggtttatcaggataaagcactgagagataaggaaagataccagactggaatgcaaga 199
>gnl|LJGI|TC66492 weakly similar to UniRef100_A9RCM0 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(37%)
Length = 884
Score = 54.0 bits (27), Expect = 2e-06
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 776 gtgatccatctctaccaaagtcgaacaggagtggttacaatttcttctttgctga 830
||||||| |||| ||||| ||||||| ||||| ||||||||||||||||||||
Sbjct: 270 gtgatcctgctcttccaaaaccgaacagaagtggatacaatttcttctttgctga 324