Miyakogusa Predicted Gene
- Lj3g3v1918700.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1918700.1 Non Chatacterized Hit- tr|F6HNJ9|F6HNJ9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,24.57,0.00000000000005,PPR,Pentatricopeptide repeat; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; PPR_1,Pentatricopepti,CUFF.43302.1
(1018 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC82170 weakly similar to UniRef100_A7P9F5 Cluster: Chr... 262 4e-69
gnl|LJGI|TC60576 similar to UniRef100_A7P9F5 Cluster: Chromosome... 262 4e-69
gnl|LJGI|DC593356 weakly similar to UniRef100_A7P9F5 Cluster: Ch... 228 5e-59
gnl|LJGI|TC68987 similar to UniRef100_Q6ILL4 Cluster: HDC09080; ... 200 1e-50
gnl|LJGI|TC62621 172 3e-42
gnl|LJGI|AV776874 weakly similar to UniRef100_Q7X9F7 Cluster: Le... 145 6e-34
gnl|LJGI|BW594341 weakly similar to UniRef100_A7QH77 Cluster: Ch... 141 1e-32
gnl|LJGI|FS356651 135 6e-31
gnl|LJGI|TC81373 similar to UniRef100_A7PSR1 Cluster: Chromosome... 117 1e-25
gnl|LJGI|TC81881 similar to UniRef100_A6FHB6 Cluster: Spr protei... 111 9e-24
gnl|LJGI|FS354708 weakly similar to UniRef100_Q9FIX3 Cluster: Gb... 88 1e-16
gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Sal... 78 1e-13
gnl|LJGI|FS330439 weakly similar to UniRef100_A7PSR1 Cluster: Ch... 68 1e-10
gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chr... 62 7e-09
gnl|LJGI|BP042555 58 1e-07
>gnl|LJGI|TC82170 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 832
Score = 262 bits (132), Expect = 4e-69
Identities = 276/324 (85%)
Strand = Plus / Plus
Query: 577 ttaatatttgaacattgtagatcccataatgttcataaggcgtataatatgtacatggag 636
|||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||
Sbjct: 304 ttaatatttgaacattctagatgtcgtaatgttcataaggcgtatgatatgtacatggag 363
Query: 637 atggtgcattatggtcatgctccgcacatgttttctgtacttgctcttattagtgctcta 696
||||||||||||||| |||||| || ||||| ||||||| |||||||||| | ||||||
Sbjct: 364 atggtgcattatggttttgctcctcatatgttctctgtacgtgctcttatttgggctcta 423
Query: 697 gatgatgatagaatgtacaatgagatgtcttgggtaattaataacacattgaggagctgt 756
|| ||| | ||| ||||||| ||||| |||||||| | | ||||||||||||||||||
Sbjct: 424 tatcatggtggaaggtacaataagatgatttgggtaaatcaaaacacattgaggagctgt 483
Query: 757 aatctcagtgattctgagcagcttaaagtgcttagtgaaattaatgtcacgaaatctgaa 816
||||||| |||||| |||| |||||||| |||| ||||||| | |||| | || ||||
Sbjct: 484 aatctcaatgattccgagctacttaaagtacttaatgaaattgacgtcaaggaaggtgaa 543
Query: 817 atttatgctcttttggatgtgttagctgaaatggccatggatagcctgttacttgatggt 876
| | |||||| || |||| |||||||||| ||||||||| | |||||||||||||||
Sbjct: 544 actggggctcttgaggttgtgctagctgaaatagccatggatgggctgttacttgatggt 603
Query: 877 ggaaagtgttcatatgctccagca 900
|||||||||||||||||| |||||
Sbjct: 604 ggaaagtgttcatatgcttcagca 627
Score = 69.9 bits (35), Expect = 3e-11
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 413 tagagaactgcagtaatagtgaatttaagagtctggtagagcttgttaaag 463
|||||||||||||||||| ||||||||||||| |||||| |||||| ||||
Sbjct: 158 tagagaactgcagtaataatgaatttaagagtgtggtagggcttgtcaaag 208
Score = 61.9 bits (31), Expect = 7e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 304 aatggacttcataagaaagctaggacaagagaagctaag 342
||||||||| ||||||||||||||||||| |||||||||
Sbjct: 55 aatggacttaataagaaagctaggacaagggaagctaag 93
>gnl|LJGI|TC60576 similar to UniRef100_A7P9F5 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 914
Score = 262 bits (132), Expect = 4e-69
Identities = 297/352 (84%)
Strand = Plus / Plus
Query: 548 ataagacagatggaggaatgtataacctgttaatatttgaacattgtagatcccataatg 607
||||| ||||||||| | | ||||| ||||||||||| |||| |||| || |||||
Sbjct: 162 ataagccagatggagcagtttataatttgttaatatttagtcattctagaagccttaatg 221
Query: 608 ttcataaggcgtataatatgtacatggagatggtgcattatggtcatgctccgcacatgt 667
|| ||||||| ||||||||||||| ||||||||||||||||||| || ||| || ||||
Sbjct: 222 ttgataaggcatataatatgtacaaggagatggtgcattatggttttgatcctcatatgt 281
Query: 668 tttctgtacttgctcttattagtgctctagatgatgatagaatgtacaatgagatgtctt 727
| ||||| ||||||||||||| |||||| || ||| ||||| |||| |||||| | ||
Sbjct: 282 tctctgtgcttgctcttattaaagctctatatcatgttagaaggtacgatgagacgcgtt 341
Query: 728 gggtaattaataacacattgaggagctgtaatctcagtgattctgagcagcttaaagtgc 787
|||||||| | ||||||||||||||||||||||||| ||||||||||| | |||||| |
Sbjct: 342 gggtaattcaaaacacattgaggagctgtaatctcaatgattctgagctacctaaagtac 401
Query: 788 ttagtgaaattaatgtcacgaaatctgaaatttatgctcttttggatgtgttagctgaaa 847
|| ||||||| |||||| ||||| | ||||| |||||||| || |||| |||||||||
Sbjct: 402 ttgatgaaattgatgtcaggaaatttcaaattcatgctcttctgtctgtgctagctgaaa 461
Query: 848 tggccatggatagcctgttacttgatggtggaaagtgttcatatgctccagc 899
| ||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 462 tagccgtggatggcctgttacttgatggtggaaagtgttcatatgcttcagc 513
>gnl|LJGI|DC593356 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (8%)
Length = 591
Score = 228 bits (115), Expect = 5e-59
Identities = 244/287 (85%)
Strand = Plus / Plus
Query: 607 gttcataaggcgtataatatgtacatggagatggtgcattatggtcatgctccgcacatg 666
|||| |||||| ||||||||||||||||||||||||||||||||| || ||| || |||
Sbjct: 1 gttcgtaaggcctataatatgtacatggagatggtgcattatggttttgttcctcatatg 60
Query: 667 ttttctgtacttgctcttattagtgctctagatgatgatagaatgtacaatgagatgtct 726
|| |||| |||||||||||||| |||||| || || ||| | | ||||||||| |
Sbjct: 61 ttctctgcacttgctcttattaaggctctacattattgcggaaggcagaatgagatgagt 120
Query: 727 tgggtaattaataacacattgaggagctgtaatctcagtgattctgagcagcttaaagtg 786
||||||||| | ||||||||||||||||||||||||| ||| | ||||| | ||||||
Sbjct: 121 tgggtaattcaaaacacattgaggagctgtaatctcaatgagtttgagctacctaaagta 180
Query: 787 cttagtgaaattaatgtcacgaaatctgaaatttatgctcttttggatgtgttagctgaa 846
|||| ||||||| | || |||||| | ||||| |||||||||||||||| ||||||||
Sbjct: 181 cttaatgaaattgacttcccgaaatgtaaaattaatgctcttttggatgtactagctgaa 240
Query: 847 atggccatggatagcctgttacttgatggtggaaagtgttcatatgc 893
|| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 241 attgccatggatggcctgttacttgatggtggaaagtgttcatatgc 287
>gnl|LJGI|TC68987 similar to UniRef100_Q6ILL4 Cluster: HDC09080; n=1; Drosophila
melanogaster|Rep: HDC09080 - Drosophila melanogaster
(Fruit fly), partial (10%)
Length = 813
Score = 200 bits (101), Expect = 1e-50
Identities = 251/301 (83%)
Strand = Plus / Plus
Query: 577 ttaatatttgaacattgtagatcccataatgttcataaggcgtataatatgtacatggag 636
||||||| ||| ||||||||||| ||||||| |||||||||| ||||||||| ||||
Sbjct: 170 ttaatatatgatcattgtagatctggtaatgtttgtaaggcgtatgatatgtacaaggag 229
Query: 637 atggtgcattatggtcatgctccgcacatgttttctgtacttgctcttattagtgctcta 696
||||||||||||||| |||| | || ||||| ||||||||||||||||||| ||||||
Sbjct: 230 atggtgcattatggttttgcttctcatatgttctctgtacttgctcttattaaggctcta 289
Query: 697 gatgatgatagaatgtacaatgagatgtcttgggtaattaataacacattgaggagctgt 756
|| ||||| ||| ||| |||||||| |||||| ||| | || || ||||||||||||
Sbjct: 290 tattatgatggaagttaccatgagatgagttgggtgattcaaaatactttgaggagctgt 349
Query: 757 aatctcagtgattctgagcagcttaaagtgcttagtgaaattaatgtcacgaaatctgaa 816
||||||| ||||||||||| || |||| |||| ||||||| | || | |||| ||||
Sbjct: 350 aatctcaatgattctgagctaattgaagtacttaatgaaattgacgtgaggaaacgtgaa 409
Query: 817 atttatgctcttttggatgtgttagctgaaatggccatggatagcctgttacttgatggt 876
||| |||||||||||||||| |||||||| | ||||| ||| |||||||||||||||||
Sbjct: 410 attgatgctcttttggatgtactagctgaagtagccatagatggcctgttacttgatggt 469
Query: 877 g 877
|
Sbjct: 470 g 470
Score = 58.0 bits (29), Expect = 1e-07
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 396 agtatatgatattcttttagagaactgcagtaatagtgaatttaagagtctggtagagct 455
|||| |||||||||| |||||||||||||||||| ||| |||| |||| |||||| |||
Sbjct: 7 agtacatgatattctgatagagaactgcagtaataatgattttaggagtgtggtagggct 66
Query: 456 t 456
|
Sbjct: 67 t 67
Score = 58.0 bits (29), Expect = 1e-07
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 931 attattgtcttcctgattttaatcctaagaggt 963
|||||||||||| ||||||||||||||||||||
Sbjct: 503 attattgtcttcttgattttaatcctaagaggt 535
>gnl|LJGI|TC62621
Length = 736
Score = 172 bits (87), Expect = 3e-42
Identities = 240/291 (82%)
Strand = Plus / Plus
Query: 604 aatgttcataaggcgtataatatgtacatggagatggtgcattatggtcatgctccgcac 663
|||||| ||||||||||| | ||||||| ||||||||||||||||||| | ||| ||
Sbjct: 168 aatgttaataaggcgtatgaaatgtacaaggagatggtgcattatggtttttttcctcat 227
Query: 664 atgttttctgtacttgctcttattagtgctctagatgatgatagaatgtacaatgagatg 723
||||||||||||||| |||| ||| ||||||| || | ||||||| | ||| |||||||
Sbjct: 228 atgttttctgtactttctctgattcatgctctatattacgatagaaagaacagtgagatg 287
Query: 724 tcttgggtaattaataacacattgaggagctgtaatctcagtgattctgagcagcttaaa 783
|||||||||| ||||||||||||||||||||||||| ||||||||| | | | ||
Sbjct: 288 ggttgggtaattcgaaacacattgaggagctgtaatctcaatgattctgaactacatcaa 347
Query: 784 gtgcttagtgaaattaatgtcacgaaatctgaaatttatgctcttttggatgtgttagct 843
|| |||| ||||||| | |||| ||| | | | ||| ||||||||||| ||| | |||||
Sbjct: 348 gtacttaatgaaattgaagtcaagaagtgtaagattgatgctcttttgaatgcgctagct 407
Query: 844 gaaatggccatggatagcctgttacttgatggtggaaagtgttcatatgct 894
|||| ||| ||||| || |||| |||||| ||||||||||||||||||||
Sbjct: 408 aaaatagccgtggatggcatgttgcttgatcgtggaaagtgttcatatgct 458
>gnl|LJGI|AV776874 weakly similar to UniRef100_Q7X9F7 Cluster: Lectin; n=1; Galega
orientalis|Rep: Lectin - Galega orientalis, partial (7%)
Length = 588
Score = 145 bits (73), Expect = 6e-34
Identities = 139/161 (86%)
Strand = Plus / Minus
Query: 739 aacacattgaggagctgtaatctcagtgattctgagcagcttaaagtgcttagtgaaatt 798
||||||||||||||||||||||||| |||||||||||| |||||| | ||| |||||||
Sbjct: 577 aacacattgaggagctgtaatctcaatgattctgagcaacttaaaatacttgatgaaatt 518
Query: 799 aatgtcacgaaatctgaaatttatgctcttttggatgtgttagctgaaatggccatggat 858
| | || || | |||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 517 gaccgcgagagatgtataatttatgctcttttggatgtgctagctgaaaaagccatggat 458
Query: 859 agcctgttacttgatggtggaaagtgttcatatgctccagc 899
|| |||||||||||||||||||||||||||||||| ||||
Sbjct: 457 ggcttgttacttgatggtggaaagtgttcatatgcttcagc 417
>gnl|LJGI|BW594341 weakly similar to UniRef100_A7QH77 Cluster: Chromosome chr18
scaffold_96, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_96, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (4%)
Length = 458
Score = 141 bits (71), Expect = 1e-32
Identities = 194/235 (82%)
Strand = Plus / Plus
Query: 1 atgcctgagatggggttgtcccctaatgctgttagttatagcactgttatatccgggttt 60
|||||| ||||||| ||||||||| ||| ||||||||||| | |||||||||||| |||
Sbjct: 133 atgcctcagatgggattgtcccctgatggtgttagttataacgctgttatatccgcgtta 192
Query: 61 tgccaaatcggggagctggggaaggcgtatgaattgaagattgagacggaggacaaggcc 120
|||| |||| |||||||||||||||| | ||| |||||| |||||| ||| || ||| |
Sbjct: 193 tgccgaatccgggagctggggaaggcctttgatttgaagtttgagatggatgaaaagagc 252
Query: 121 atctggtggctcgatgaagacacgtatgattcacttatggacagcctgtcgtatgaggat 180
||| | | | ||||||||||| |||| ||||||||||| |||||| ||||||||
Sbjct: 253 atcggtccgttggatgaagacaccaatgaatcacttatggaaccactgtcggatgaggat 312
Query: 181 acttattctagtgtgatgaatgactacttagctgaaggtaacatgcaaagggctt 235
|||||||||||| |||||||||| || || ||| |||||||| || ||| |||||
Sbjct: 313 acttattctagtttgatgaatgaatattttgctcaaggtaacttggaaaaggctt 367
>gnl|LJGI|FS356651
Length = 566
Score = 135 bits (68), Expect = 6e-31
Identities = 168/200 (84%), Gaps = 6/200 (3%)
Strand = Plus / Minus
Query: 707 gaatgtacaatgagatgtcttgggtaattaataacacattgaggagctgtaatctcagtg 766
||||||||||||||| | |||||||||| | ||||||||||||||||||||||||| ||
Sbjct: 560 gaatgtacaatgagaggagttgggtaattcaaaacacattgaggagctgtaatctcaatg 501
Query: 767 attctgagcagcttaaagtgcttagtgaaattaatgtcacgaaat---ctgaaatttatg 823
||||||||| | |||||| |||| ||||||| | || ||||| || |||| ||
Sbjct: 500 attctgagctacataaagtacttaatgaaattgacaccaggaaatttcctccaattggtg 441
Query: 824 ct---cttttggatgtgttagctgaaatggccatggatagcctgttacttgatggtggaa 880
|| |||||||||||| | |||||||| ||||||||| ||||||||||||||||| |||
Sbjct: 440 ctactcttttggatgtgcttgctgaaatagccatggatggcctgttacttgatggtagaa 381
Query: 881 agtgttcatatgctccagca 900
|||||||||||||| |||||
Sbjct: 380 agtgttcatatgcttcagca 361
>gnl|LJGI|TC81373 similar to UniRef100_A7PSR1 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 663
Score = 117 bits (59), Expect = 1e-25
Identities = 89/99 (89%)
Strand = Plus / Plus
Query: 1 atgcctgagatggggttgtcccctaatgctgttagttatagcactgttatatccgggttt 60
||||||||||| |||||||||||| |||||||||||||| |||||||||||| ||||||
Sbjct: 457 atgcctgagatcgggttgtcccctgatgctgttagttattgcactgttatattagggttt 516
Query: 61 tgccaaatcggggagctggggaaggcgtatgaattgaag 99
|||| |||| |||||| |||||||||||||| ||||||
Sbjct: 517 tgccgaatccgggagccagggaaggcgtatgagttgaag 555
>gnl|LJGI|TC81881 similar to UniRef100_A6FHB6 Cluster: Spr protein; n=1; Moritella
sp. PE36|Rep: Spr protein - Moritella sp. PE36, partial
(8%)
Length = 419
Score = 111 bits (56), Expect = 9e-24
Identities = 125/148 (84%)
Strand = Plus / Plus
Query: 739 aacacattgaggagctgtaatctcagtgattctgagcagcttaaagtgcttagtgaaatt 798
||||||||||||||||||||||||| ||||| ||||| ||||||| ||| ||||| |
Sbjct: 33 aacacattgaggagctgtaatctcaatgattttgagctacttaaagcacttcctgaaaat 92
Query: 799 aatgtcacgaaatctgaaatttatgctcttttggatgtgttagctgaaatggccatggat 858
||||| |||| ||||||| ||||||||||| ||||||| |||||| | |||||||
Sbjct: 93 gatgtccagaaaggtgaaattgatgctcttttgaatgtgttgactgaaaaagtcatggat 152
Query: 859 agcctgttacttgatggtggaaagtgtt 886
||||||||||| |||||||||||||||
Sbjct: 153 ggcctgttacttaatggtggaaagtgtt 180
>gnl|LJGI|FS354708 weakly similar to UniRef100_Q9FIX3 Cluster: Gb|AAD30619.1; n=1;
Arabidopsis thaliana|Rep: Gb|AAD30619.1 - Arabidopsis
thaliana, partial (3%)
Length = 543
Score = 87.7 bits (44), Expect = 1e-16
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 825 tcttttggatgtgttagctgaaatggccatggatagcctgttacttgatggtggaaagtg 884
||||||| ||||| |||||||||| || |||||| ||||| ||||| |||||||||||||
Sbjct: 359 tcttttgaatgtgctagctgaaatagcgatggatggcctgctacttaatggtggaaagtg 300
Query: 885 ttcatatgctccagca 900
|||||||||||||||
Sbjct: 299 ctcatatgctccagca 284
>gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Salt-inducible
protein-like; n=2; Arabidopsis thaliana|Rep:
Salt-inducible protein-like - Arabidopsis thaliana
(Mouse-ear cress), partial (5%)
Length = 669
Score = 77.8 bits (39), Expect = 1e-13
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 16 ttgtcccctaatgctgttagttatagcactgttatatccgggttttg 62
||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 507 ttgtcccctgatgctgttagttataccactgttatatccgggttttg 553
>gnl|LJGI|FS330439 weakly similar to UniRef100_A7PSR1 Cluster: Chromosome chr8
scaffold_29, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_29, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (5%)
Length = 742
Score = 67.9 bits (34), Expect = 1e-10
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 atgcctgagatggggttgtcccctaatgctgttagttatagcactgttatatccgggttt 60
|||||||||||||| ||||||||| | ||||||||||||| | |||||||||||| |||
Sbjct: 681 atgcctgagatgggtttgtcccctgacgctgttagttatataattgttatatccggtttt 740
Query: 61 tg 62
||
Sbjct: 741 tg 742
>gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (19%)
Length = 877
Score = 61.9 bits (31), Expect = 7e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 5 ctgagatggggttgtcccctaatgctgttagttatagcactgttatatccgggttttgc 63
|||||| ||| ||||||||| ||| ||||||||||| |||| ||||||| |||||||||
Sbjct: 601 ctgagaggggtttgtcccctgatgttgttagttataccactattatatctgggttttgc 659
>gnl|LJGI|BP042555
Length = 497
Score = 58.0 bits (29), Expect = 1e-07
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 47 ttatatccgggttttgccaaatcggggagctggggaaggcgtatgaattgaag 99
|||||| |||||||||||||| |||| ||||||| ||||||| |||| |||||
Sbjct: 399 ttatatgcgggttttgccaaaccgggaagctgggtaaggcgtttgaaatgaag 451