Miyakogusa Predicted Gene
- Lj3g3v1906470.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1906470.1 tr|I1M0N3|I1M0N3_SOYBN DNA-directed RNA
polymerase OS=Glycine max GN=Gma.25522 PE=3
SV=1,86.2,0,RNA_pol_Rpb2_6,DNA-directed RNA polymerase, subunit 2,
domain 6; RNA_pol_Rpb2_3,RNA polymerase Rpb2,,CUFF.43307.1
(2988 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67126 similar to UniRef100_A7Q5C4 Cluster: DNA-direct... 1705 0.0
gnl|LJGI|TC82798 similar to UniRef100_Q9C8S4 Cluster: DNA-direct... 1669 0.0
gnl|LJGI|TC80312 similar to UniRef100_A7Q5C4 Cluster: DNA-direct... 394 e-108
>gnl|LJGI|TC67126 similar to UniRef100_A7Q5C4 Cluster: DNA-directed RNA polymerase;
n=1; Vitis vinifera|Rep: DNA-directed RNA polymerase -
Vitis vinifera (Grape), partial (35%)
Length = 963
Score = 1705 bits (860), Expect = 0.0
Identities = 878/887 (98%)
Strand = Plus / Plus
Query: 1752 agttctggcatatacaggatatgatatggaggatgccatgattctaaataagtcatcagt 1811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 agttctggcatatacaggatatgatatggaggatgccatgattctaaataagtcatcagt 136
Query: 1812 agaacgtggaatgtttcacggacaaatttatcagactgaaactgttgacttgactgaaca 1871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 agaacgtggaatgtttcacggacaaatttatcagactgaaactgttgacttgactgaaca 196
Query: 1872 aggcagcaggtctgacccatcttcaagaatgttcagaaaaagtaacatagagaagtccaa 1931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aggcagcaggtctgacccatcttcaagaatgttcagaaaaagtaacatagagaagtccaa 256
Query: 1932 gcttgattcagatggacttccacatgttggtcagatgatacggccagatgaaccctactg 1991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcttgattcagatggacttccacatgttggtcagatgatacggccagatgaaccctactg 316
Query: 1992 tagcatttataatgcttcaacgagttccacgcacaccttnnnnnnnnngggttctgaacc 2051
||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 317 tagcatttataatgcttcaacgagttccacgcacaccttaaaaaaaaagggttctgaacc 376
Query: 2052 tgtttatgttgactatgttgctgttgatgtaaaaaacaagaaggaccttcaaaaggttaa 2111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgtttatgttgactatgttgctgttgatgtaaaaaacaagaaggaccttcaaaaggttaa 436
Query: 2112 tattcgttttcgacatccgcggaacccggtgattggtgataaatttagtagtaggcatgg 2171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tattcgttttcgacatccgcggaacccggtgattggtgataaatttagtagtaggcatgg 496
Query: 2172 acagaaaggtgtttgctctcagttgtggccagatgttgatatgccattttgtggaactac 2231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acagaaaggtgtttgctctcagttgtggccagatgttgatatgccattttgtggaactac 556
Query: 2232 tgggatgcgcccagatctcattatcaatcctcatgcatttccttctcggatgacaattgc 2291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgggatgcgcccagatctcattatcaatcctcatgcatttccttctcggatgacaattgc 616
Query: 2292 catgcttctggaatctgttgctgctaagggaggtagcctacatggagaatttgtaaatgc 2351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 catgcttctggaatctgttgctgctaagggaggtagcctacatggagaatttgtaaatgc 676
Query: 2352 aactccatttcgtggttcagtgaagaaagataatggggaatctgaaaagtcaggtttgct 2411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aactccatttcgtggttcagtgaagaaagataatggggaatctgaaaagtcaggtttgct 736
Query: 2412 ccttgatgatcttggtcaaatgctaagagaaaagggatttaactatcatggtttagaggt 2471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ccttgatgatcttggtcaaatgctaagagaaaagggatttaactatcatggtttagaggt 796
Query: 2472 tctgtacagtggggtttacgggaaagaattaacatgcgagatattcattggacctgttta 2531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tctgtacagtggggtttacgggaaagaattaacatgcgagatattcattggacctgttta 856
Query: 2532 ttatcagcggctacgccacatggtttcagacaaatttcaggttcgatctaccggcacagt 2591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ttatcagcggctacgccacatggtttcagacaaatttcaggttcgatctaccggcacagt 916
Query: 2592 tgaccaggttacacggcagccaataaaaggacgaaagcgtggtggtg 2638
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 tgaccaggttacacggcagccaataaaaggacgaaagcgtggtggtg 963
>gnl|LJGI|TC82798 similar to UniRef100_Q9C8S4 Cluster: DNA-directed RNA polymerase;
n=1; Arabidopsis thaliana|Rep: DNA-directed RNA
polymerase - Arabidopsis thaliana (Mouse-ear cress),
partial (23%)
Length = 858
Score = 1669 bits (842), Expect = 0.0
Identities = 854/858 (99%)
Strand = Plus / Plus
Query: 158 gggagtacttgcttcccgtaggcattgttttgaaggccctcattgacaccagtgaccttg 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggagtacttgcttcccgtaggcattgttttgaaggccctcattgacaccagtgaccttg 60
Query: 218 aaattcgtacaaatttgaaaagctgctacaatgagaagtatgaaaagggaaagggtgctg 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaattcgtacaaatttgaaaagctgctacaatgagaagtatgaaaagggaaagggtgctg 120
Query: 278 ttggaacccagcgtgttgacgatagggcaagaatgataatagaggaagttcgacagttgt 337
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttggaacccaccgtgttgaccatagggcaagaatgataatagaggaagttcgacagttgt 180
Query: 338 ctcttttcactcgccttcaatgtctaaattatatcggagagcatttccaacctattctga 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctcttttcactcgccttcaatgtctaaattatatcggagagcatttccaacctattctga 240
Query: 398 ctgaacttaaaaatgacagctatgataccgtggccaaggcagttctaaaggactacgtgt 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgaacttaaaaatgacagctatgataccgtggccaaggcagttctaaaggactacgtgt 300
Query: 458 ttgttcatctggatgataattttgacaagttcaatctgctcattttcatgctgcagaaac 517
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 301 ttgttcatctggatgataattttgacaagttcaatctgctcatcttcatgctgcagaaac 360
Query: 518 ttttctcccttgtagatggtacgtcagtgttggacaaccctgattctttacaaaatcagg 577
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttttctcacttgtagatggtacgtcagtgttggacaaccctgattctttacaaaatcagg 420
Query: 578 aggttttactccctggacatctgattacactttatcttaaggaaaaactagaagattggt 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aggttttactccctggacatctgattacactttatcttaaggaaaaactagaagattggt 480
Query: 638 tgcaaagtggaaaagatgagatgaagagaaaaagcgggacgtttgatttcagtgaaattt 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgcaaagtggaaaagatgagatgaagagaaaaagcgggacgtttgatttcagtgaaattt 540
Query: 698 ttgtagttaagaagtgttttgataaaactccagcaagagctatcagtacatcaattgaga 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttgtagttaagaagtgttttgataaaactccagcaagagctatcagtacatcaattgaga 600
Query: 758 atatgttgaaaactggaagattggttaccaacacaggtctggatctgcagcagagggcgg 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atatgttgaaaactggaagattggttaccaacacaggtctggatctgcagcagagggcgg 660
Query: 818 gctatacagttcaggctgatagactgaactacttgcgcttcctctcacattttcgtgctg 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gctatacagttcaggctgatagactgaactacttgcgcttcctctcacattttcgtgctg 720
Query: 878 ttcatcgaggggcctcatttgctggactccgtactacaactgtgcggaagctgttgcctg 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttcatcgaggggcctcatttgctggactccgtactacaactgtgcggaagctgttgcctg 780
Query: 938 aatcttggggttttctttgccctgtccacacacctgatggggagccctgtggattgttga 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aatcttggggttttctttgccctgtccacacacctgatggggagccctgtggattgttga 840
Query: 998 atcatatgacttgcactt 1015
||||||||||||||||||
Sbjct: 841 atcatatgacttgcactt 858
>gnl|LJGI|TC80312 similar to UniRef100_A7Q5C4 Cluster: DNA-directed RNA polymerase;
n=1; Vitis vinifera|Rep: DNA-directed RNA polymerase -
Vitis vinifera (Grape), partial (9%)
Length = 544
Score = 394 bits (199), Expect = e-108
Identities = 211/215 (98%)
Strand = Plus / Plus
Query: 2774 catcatttatccagcctcagaagcttccgaggcgcgagattggtgggctgcccccaagaa 2833
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 1 catcatttatccagcctcagaagcttccgaggcgcgagattggtgggctgccccccagca 60
Query: 2834 aagctccgaaaaaggtcatctgtcatgcttgccaaaccagtaaaggcatggagacagttg 2893
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61 aagctccgaaaaaggtcatctgtcatgcttgcctaaccagtaaaggcatggagacagttg 120
Query: 2894 ccatgccctatgtgtttagatatttggcagctgagtttgcagcaatgaacattaaaatga 2953
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 ccatgccctatgtgtttagatatttggcagctgagtttgcagccatgaacattaaaatga 180
Query: 2954 ctcttaaactaaataatggagctagcgcctgatat 2988
|||||||||||||||||||||||||||||||||||
Sbjct: 181 ctcttaaactaaataatggagctagcgcctgatat 215