Miyakogusa Predicted Gene

Lj3g3v1832010.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v1832010.1 Non Chatacterized Hit- tr|B9SC94|B9SC94_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,72.5,0.00001,seg,NULL,CUFF.43219.1
         (162 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC68549 similar to UniRef100_Q9FUA4 Cluster: Transcript...   280   2e-75
gnl|LJGI|TC77685 similar to UniRef100_Q5ULY0 Cluster: Basic heli...   208   7e-54

>gnl|LJGI|TC68549 similar to UniRef100_Q9FUA4 Cluster: Transcription factor SPATULA;
           n=2; Arabidopsis thaliana|Rep: Transcription factor
           SPATULA - Arabidopsis thaliana (Mouse-ear cress),
           partial (18%)
          Length = 840

 Score =  280 bits (141), Expect = 2e-75
 Identities = 161/168 (95%), Gaps = 6/168 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaggagggcattgaagcattgggtgaagaggttaggacaaagtctgttccttcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atgaaggagggcattgaagcattgggtgaagaggttaggacaaagtctgttccttcttct 549

                                                                       
Query: 61  aggagctcatctaaaaggactagagcagcagaggttcataatttgtctgaaa------ag 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||      ||
Sbjct: 550 aggagctcatctaaaaggactagagcagcagaggttcataatttgtctgaaaaggagcag 609

                                                           
Query: 115 gatcaacgagaaaatgaaggctttgcaaaatctaattccaaactctaa 162
           ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 610 gatcaacgagaaaatgaagactttgcaaaatctaattccaaactctaa 657


>gnl|LJGI|TC77685 similar to UniRef100_Q5ULY0 Cluster: Basic helix-loop-helix
           protein; n=1; Fragaria x ananassa|Rep: Basic
           helix-loop-helix protein - Fragaria ananassa
           (Strawberry), partial (45%)
          Length = 688

 Score =  208 bits (105), Expect = 7e-54
 Identities = 153/172 (88%), Gaps = 14/172 (8%)
 Strand = Plus / Plus

                                                                       
Query: 5   aggagggcattgaagcattgggtgaagaggttaggacaaagtctgttccttcttctagga 64
           |||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 366 aggagggtgttgaagcattgggtgaagaggttaggacaaagtctcttccttcttctagga 425

                                                                       
Query: 65  gctcatctaaaaggactagagcagcagaggttcataatttgtctgaaa------------ 112
           ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 426 gctcatctaaaaggactagagcagcagaggttcataatttgtctgaaaagaggagaagga 485

                                                               
Query: 113 --aggatcaacgagaaaatgaaggctttgcaaaatctaattccaaactctaa 162
             |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 486 gcaggatcaacgagaagatgaaggctttgcaaaatctgattccaaactctaa 537