Miyakogusa Predicted Gene

Lj3g3v1790390.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v1790390.1 CUFF.43163.1
         (300 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV776121                                                     174   2e-43

>gnl|LJGI|AV776121 
          Length = 360

 Score =  174 bits (88), Expect = 2e-43
 Identities = 144/160 (90%), Gaps = 2/160 (1%)
 Strand = Plus / Minus

                                                                       
Query: 122 cagtacaggtccacgaaacaggggatagtgccaacaaggtcaagagcaaaag-tttaaca 180
           ||||||||||||||| ||| |||||||| ||||| ||| ||||||||||||  |||||||
Sbjct: 162 cagtacaggtccacgcaaccggggatagagccaa-aagctcaagagcaaaaactttaaca 104

                                                                       
Query: 181 atcagcatttcaattctggtctcaaagaatgctcaagcagtaccttgggtttatactcca 240
           |||| || ||||||| |||||||| ||| |||||| |||||| ||||||||| |||||||
Sbjct: 103 atcaacaattcaattatggtctcatagattgctcaggcagtaacttgggtttgtactcca 44

                                                   
Query: 241 atcataaaaagagtaaagaaagtctttactctttgctgtc 280
           |||||||||||||||| |||||||||||||||||||||||
Sbjct: 43  atcataaaaagagtaatgaaagtctttactctttgctgtc 4