Miyakogusa Predicted Gene
- Lj3g3v1749380.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1749380.1 tr|E5GCI2|E5GCI2_CUCME Retrotransposon protein
(Fragment) OS=Cucumis melo subsp. melo PE=4
SV=1,32.84,0.0007,seg,NULL,CUFF.43049.1
(3198 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS339976 similar to UniRef100_A9UTK4 Cluster: Predicted... 1463 0.0
gnl|LJGI|TC80541 975 0.0
gnl|LJGI|TC63699 791 0.0
gnl|LJGI|TC76376 similar to UniRef100_Q1JX87 Cluster: Cytochrome... 571 e-161
gnl|LJGI|TC81515 119 1e-25
gnl|LJGI|BP057320 107 4e-22
gnl|LJGI|FS345157 homologue to UniRef100_A7D1F4 Cluster: Major f... 66 1e-09
gnl|LJGI|AV776597 similar to UniRef100_O21477 Cluster: Cytochrom... 62 2e-08
gnl|LJGI|AV777431 56 1e-06
>gnl|LJGI|FS339976 similar to UniRef100_A9UTK4 Cluster: Predicted protein; n=1;
Monosiga brevicollis MX1|Rep: Predicted protein -
Monosiga, partial (0%)
Length = 801
Score = 1463 bits (738), Expect = 0.0
Identities = 741/742 (99%)
Strand = Plus / Plus
Query: 1 atggtgctcaactatgatgtattatcatccatcctttccgcacaacgtgatccccgatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 atggtgctcaactatgatgtattatcatccatcctttccgcacaacgtgatccccgatcc 119
Query: 61 atcttctacagtcccccatctcagcccaatacatcaccttattactgtcacaatgtccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atcttctacagtcccccatctcagcccaatacatcaccttattactgtcacaatgtccca 179
Query: 121 tcttattacccacaaacacattcaagtctgcagctctcggagttcaatggagagaaccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tcttattacccacaaacacattcaagtctgcagctctcggagttcaatggagagaaccct 239
Query: 181 gaatactggttgttcatggcagattgctatttccttcaaaatccctacccatgggaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaatactggttgttcatggcagattgctatttccttcaaaatccctacccatgggaaaca 299
Query: 241 cggttccagctcttggcaatacatctgggtggcaaggccctgacatggttccgattgagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cggttccagctcttggcaatacatctgggtggcaaggccctgacatggttccgattgagc 359
Query: 301 caccaacagatccatagctgggaggaattcaaagttgtgttccgattgtactttgtctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 caccaacagatccatagctgggaggaattcaaagttgtgttccgattgtactttgtctac 419
Query: 361 aacagacccaacggattttctacaaccacagtcaaatatgggtttgagaaatcttcattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aacagacccaacggattttctacaaccacagtcaaatatgggtttgagaaatcttcattg 479
Query: 421 gttgagattcagagaagctctgaacaagtttctcctcatagggttgttttcagtgaaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gttgagattcagagaagctctgaacaagtttctcctcatagggttgttttcagtgaaaca 539
Query: 481 acactggaggatggagctcagctcccgtttgaggcttcttcagacgtgcatctcctacct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 acactggaggatggagctcagctcccgtttgaggcttcttcagacgtgcatctcctacct 599
Query: 541 aaggtggtttctagggtggaattgggtagtgcagaaacagagattgaatcccacgagtca 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gaggtggtttctagggtggaattgggtagtgcagaaacagagattgaatcccacgagtca 659
Query: 601 tctacatccgaggactcctctctcatcactaccccagttgattcaaccccatatgcaaca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tctacatccgaggactcctctctcatcactaccccagttgattcaaccccatatgcaaca 719
Query: 661 aggtcagatgctattactcctgatgtaaacaaaacatttgttttgaaaacaactgactta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aggtcagatgctattactcctgatgtaaacaaaacatttgttttgaaaacaactgactta 779
Query: 721 gttcttaggaacccccgccaag 742
||||||||||||||||||||||
Sbjct: 780 gttcttaggaacccccgccaag 801
>gnl|LJGI|TC80541
Length = 783
Score = 975 bits (492), Expect = 0.0
Identities = 505/508 (99%), Gaps = 1/508 (0%)
Strand = Plus / Plus
Query: 2692 cttcacaatgtcacatattgttctcttcttacttggattctcatccttgcatggctaccc 2751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcacaatgtcacatattgttctcttcttacttggattctcatccttgcatggctaccc 60
Query: 2752 cacttgttcacaaggggtcaaacgaagcttgctcaccatgctcaacactctttcaattgg 2811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cacttgttcacaaggggtcaaacgaagcttgctcaccatgctcaacactctttcaattgg 120
Query: 2812 gtctttcttatattgggctggtcttacaagacttccctatgtccaccacttgaattgtct 2871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtctttcttatattgggctggtcttacaagacttccctatgtccaccacttgaattgtct 180
Query: 2872 ttccaacaaagcttaatagcgtggctaggcttccccattggccatgaaattaaatggcgt 2931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttccaacaaagcttaatagcgtggctaggcttccccattggccatgaaattaaatggcgt 240
Query: 2932 gaacttcttgcttcat-gggacagcacacaaggcattttttgttactacacaccacatca 2990
|||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 241 gaacttcttgcttcatggggacagcacacaaggcattttttgttgctacaccccacatca 300
Query: 2991 agtcactctattggcccttcatgctaccttggtgctttcatttaacatgacagttacttc 3050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtcactctattggcccttcatgctaccttggtgctttcatttaacatgacagttacttc 360
Query: 3051 ttttcctggacttggcctcattgacattactctcctagcatggatctttcttgttgcatg 3110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttttcctggacttggcctcattgacattactctcctagcatggatctttcttgttgcatg 420
Query: 3111 gctagctcacttttccatccttgaggacaaggatgttttcaaggggatggtaatggtaga 3170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gctagctcacttttccatccttgaggacaaggatgttttcaaggggatggtaatggtaga 480
Query: 3171 gggttgcattctcaatgggcttctatag 3198
||||||||||||||||||||||||||||
Sbjct: 481 gggttgcattctcaatgggcttctatag 508
>gnl|LJGI|TC63699
Length = 738
Score = 791 bits (399), Expect = 0.0
Identities = 429/439 (97%)
Strand = Plus / Plus
Query: 2760 cacaaggggtcaaacgaagcttgctcaccatgctcaacactctttcaattgggtctttct 2819
|||||| ||||||||||||||||||||||| ||||||| |||||| | ||||||| ||
Sbjct: 89 cacaagtggtcaaacgaagcttgctcaccacactcaacattctttccacggggtcttgct 148
Query: 2820 tatattgggctggtcttacaagacttccctatgtccaccacttgaattgtctttccaaca 2879
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tatattggactggtcttacaagacttccctatgtccaccacttgaattgtctttccaaca 208
Query: 2880 aagcttaatagcgtggctaggcttccccattggccatgaaattaaatggcgtgaacttct 2939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aagcttaatagcgtggctaggcttccccattggccatgaaattaaatggcgtgaacttct 268
Query: 2940 tgcttcatgggacagcacacaaggcattttttgttactacacaccacatcaagtcactct 2999
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 269 tgcttcatgggacagcacacaaggcattttttgttgctacacaccacatcaagtcactct 328
Query: 3000 attggcccttcatgctaccttggtgctttcatttaacatgacagttacttcttttcctgg 3059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 attggcccttcatgctaccttggtgctttcatttaacatgacagttacttcttttcctgg 388
Query: 3060 acttggcctcattgacattactctcctagcatggatctttcttgttgcatggctagctca 3119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acttggcctcattgacattactctcctagcatggatctttcttgttgcatggctagctca 448
Query: 3120 cttttccatccttgaggacaaggatgttttcaaggggatggtaatggtagagggttgcat 3179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cttttccatccttgaggacaaggatgttttcaaggggatggtaatggtagagggttgcat 508
Query: 3180 tctcaatgggcttctatag 3198
|||||||||||||||||||
Sbjct: 509 tctcaatgggcttctatag 527
>gnl|LJGI|TC76376 similar to UniRef100_Q1JX87 Cluster: Cytochrome c assembly protein;
n=1; Desulfuromonas acetoxidans DSM 684|Rep: Cytochrome c
assembly protein - Desulfuromonas acetoxidans DSM 684,
partial (6%)
Length = 1236
Score = 571 bits (288), Expect = e-161
Identities = 415/462 (89%), Gaps = 19/462 (4%)
Strand = Plus / Plus
Query: 2756 tgttcacaaggggtcaaacgaagcttgctcaccatgctcaacactctttcaattgggtct 2815
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
Sbjct: 551 tgttcacaaggggtcaaacgaagcttgctcaccacactcaacatcctttcaattgggttt 610
Query: 2816 ttcttatattgggctggtcttacaagacttccctatgtccaccacttgaattgtctttcc 2875
| ||||||||||||||| |||| ||||| ||| ||| ||||||||||||||||||||||
Sbjct: 611 tgcttatattgggctggacttatgagactccccaatggccaccacttgaattgtctttcc 670
Query: 2876 aacaaagcttaatagcgtggctaggcttccccattggccatgaaattaaatggcgtgaac 2935
||||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 671 aacaaggcttaatagtgtggctaggcttccccatcggccatggaattaaatggcgtgaac 730
Query: 2936 ttcttgcttcatgggacagcacacaaggcattttt-------------------tgttac 2976
|||||||||||||||||| ||||||| |||||||| |||| |
Sbjct: 731 ttcttgcttcatgggacaacacacaaagcatttttattctactgggatgggaattgttgc 790
Query: 2977 tacacaccacatcaagtcactctattggcccttcatgctaccttggtgctttcatttaac 3036
||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||
Sbjct: 791 tacacaccacatcaagtcactctattggcccttcatgctaccttgaggcttccattaaaa 850
Query: 3037 atgacagttacttcttttcctggacttggcctcattgacattactctcctagcatggatc 3096
||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 851 atgacagtttcttattttcatggacttggcctcattgacagtactctcctagcatggatc 910
Query: 3097 tttcttgttgcatggctagctcacttttccatccttgaggacaaggatgttttcaagggg 3156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 tttcttgttgcatggctagctcacttttccatccttgaggacaaggatgttttcaagggg 970
Query: 3157 atggtaatggtagagggttgcattctcaatgggcttctatag 3198
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 atggtaatggtagagggttgcattctcaatgggcttctatag 1012
>gnl|LJGI|TC81515
Length = 474
Score = 119 bits (60), Expect = 1e-25
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 3126 catccttgaggacaaggatgttttcaaggggatggtaatggtagagggttgcattctcaa 3185
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct: 184 catccttgaggacaaggatgttttcaaggggatggtaatggtagaggtttgcatgcttaa 243
Query: 3186 tgggcttctata 3197
||||||||||||
Sbjct: 244 tgggcttctata 255
>gnl|LJGI|BP057320
Length = 420
Score = 107 bits (54), Expect = 4e-22
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 3126 catccttgaggacaaggatgttttcaaggggatggtaatggtagagggttgcattctcaa 3185
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 255 catccttgaggacaaggatgttttcaaggggatggtaatggtagaaggttgcatccttaa 196
Query: 3186 tgggcttcta 3195
|||| |||||
Sbjct: 195 tgggtttcta 186
Score = 105 bits (53), Expect = 2e-21
Identities = 59/61 (96%)
Strand = Plus / Minus
Query: 2688 agtgcttcacaatgtcacatattgttctcttcttacttggattctcatccttgcatggct 2747
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 368 agtgcttctcaatgtcacatattgttctcttcttacttggattctcatcattgcatggct 309
Query: 2748 a 2748
|
Sbjct: 308 a 308
>gnl|LJGI|FS345157 homologue to UniRef100_A7D1F4 Cluster: Major facilitator
superfamily MFS_1; n=1; Halorubrum lacusprofundi ATCC
49239|Rep: Major, partial (2%)
Length = 628
Score = 65.9 bits (33), Expect = 1e-09
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 1 atggtgctcaactatgatgtattatcatccatcctttccgcacaacgtgatccccgatcc 60
|||||||||| ||||||| | ||||||||||||||| | ||||||| |||||| |||||
Sbjct: 20 atggtgctcagctatgatctgttatcatccatccttgcagcacaacaagatcccagatcc 79
Query: 61 atcttctac 69
|| ||||||
Sbjct: 80 attttctac 88
>gnl|LJGI|AV776597 similar to UniRef100_O21477 Cluster: Cytochrome b; n=2; Oceanodroma
leucorhoa|Rep: Cytochrome b - Oceanodroma leucorhoa,
partial (6%)
Length = 569
Score = 61.9 bits (31), Expect = 2e-08
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 3125 ccatccttgaggacaaggatg-ttttcaaggggatggtaatggtaga 3170
||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct: 242 ccatccttgaggacaaggatgctctttaaggggatggtaatggtaga 196
>gnl|LJGI|AV777431
Length = 564
Score = 56.0 bits (28), Expect = 1e-06
Identities = 47/52 (90%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 3125 ccatccttgaggacaaggatg-ttttcaaggggatggtaatggtagagggtt 3175
||||||||||||||||||||| | ||| || |||||||||||||||| ||||
Sbjct: 252 ccatccttgaggacaaggatgctcttccagcggatggtaatggtagaaggtt 201