Miyakogusa Predicted Gene
- Lj3g3v1729090.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1729090.2 tr|G7IUG0|G7IUG0_MEDTR Pre-mRNA-splicing factor
ATP-dependent RNA helicase PRP16 OS=Medicago
truncat,88.57,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2,
ATP-binding domain; HELICASE_CTER,Helicase, C-termina,CUFF.43042.2
(3081 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58145 homologue to UniRef100_A7QBN2 Cluster: Chromoso... 1959 0.0
gnl|LJGI|BP053203 similar to UniRef100_A7QBN2 Cluster: Chromosom... 1043 0.0
gnl|LJGI|TC63592 920 0.0
gnl|LJGI|TC74403 homologue to UniRef100_A7QBN2 Cluster: Chromoso... 652 0.0
gnl|LJGI|BP043658 homologue to UniRef100_A7QBN2 Cluster: Chromos... 535 e-151
>gnl|LJGI|TC58145 homologue to UniRef100_A7QBN2 Cluster: Chromosome chr1 scaffold_75,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_75, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 988
Score = 1959 bits (988), Expect = 0.0
Identities = 988/988 (100%)
Strand = Plus / Plus
Query: 2082 atcattaagcacagatgttctttttggaatattgaagaaagttgtagctcaacgtcgtga 2141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcattaagcacagatgttctttttggaatattgaagaaagttgtagctcaacgtcgtga 60
Query: 2142 tttcaagcttatcgtcacttcagcaactctgaatgcagagaaattttcaaatttctttgg 2201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttcaagcttatcgtcacttcagcaactctgaatgcagagaaattttcaaatttctttgg 120
Query: 2202 aagtgtgcctgtttttaatattcctgggaggacatttccggtgaatatattatggagtaa 2261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagtgtgcctgtttttaatattcctgggaggacatttccggtgaatatattatggagtaa 180
Query: 2262 aaccccatgtgaagattatgttgaaggtgcagtgaagcaggctatgactattcacataac 2321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaccccatgtgaagattatgttgaaggtgcagtgaagcaggctatgactattcacataac 240
Query: 2322 cagccctccaggtgacatccttatcttcatgactggccaagatgagattgaggcagcttg 2381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagccctccaggtgacatccttatcttcatgactggccaagatgagattgaggcagcttg 300
Query: 2382 ctatgcccttgctgaaagaatggagcagatggtgtcatctgcaaagaaagaagtccctaa 2441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctatgcccttgctgaaagaatggagcagatggtgtcatctgcaaagaaagaagtccctaa 360
Query: 2442 actattgattcttcccatatactctcaacttcctgctgacttgcaagcaaaaatatttga 2501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 actattgattcttcccatatactctcaacttcctgctgacttgcaagcaaaaatatttga 420
Query: 2502 gaaagctgaagatggagcccgtaaatgcattgtcgccactaatattgcagagacatcgtt 2561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaaagctgaagatggagcccgtaaatgcattgtcgccactaatattgcagagacatcgtt 480
Query: 2562 gactgttgatggtatctactatgtcatagatacaggctatggtaaaatgaaggtgtataa 2621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gactgttgatggtatctactatgtcatagatacaggctatggtaaaatgaaggtgtataa 540
Query: 2622 ccctaggatgggtatggatgctctccaagtcttccctgttagccgtgctgctgctgacca 2681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccctaggatgggtatggatgctctccaagtcttccctgttagccgtgctgctgctgacca 600
Query: 2682 gcgtgctggtcgagctggtagaactggacctggtacgtgctatcgcctgtatactgagag 2741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcgtgctggtcgagctggtagaactggacctggtacgtgctatcgcctgtatactgagag 660
Query: 2742 tgcttacctaaatgaaatgttgcccagtcctgttccagaaattcaaaggactaaccttgg 2801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgcttacctaaatgaaatgttgcccagtcctgttccagaaattcaaaggactaaccttgg 720
Query: 2802 caatgtggtcttgctgctgaaatctcttaaagttgaaaacttacttgattttgatttcat 2861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 caatgtggtcttgctgctgaaatctcttaaagttgaaaacttacttgattttgatttcat 780
Query: 2862 ggatccacctccacaagataatattctcaactctatgtaccagctgtgggtattgggggc 2921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ggatccacctccacaagataatattctcaactctatgtaccagctgtgggtattgggggc 840
Query: 2922 ccttaacaatgtagggggattaactgatcttggctggaaaatggttgagtttccacttga 2981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ccttaacaatgtagggggattaactgatcttggctggaaaatggttgagtttccacttga 900
Query: 2982 ccctccgcttgctaagatgcttttgatgggtgaccagttagggtgtctagaggaggtttt 3041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ccctccgcttgctaagatgcttttgatgggtgaccagttagggtgtctagaggaggtttt 960
Query: 3042 gacaatcgtttccatgctttcagtaccg 3069
||||||||||||||||||||||||||||
Sbjct: 961 gacaatcgtttccatgctttcagtaccg 988
>gnl|LJGI|BP053203 similar to UniRef100_A7QBN2 Cluster: Chromosome chr1 scaffold_75,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_75, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 530
Score = 1043 bits (526), Expect = 0.0
Identities = 529/530 (99%)
Strand = Plus / Plus
Query: 525 gcggcatagagacacttatgaaagtagggaatcttattcagaaagggattcccgtagtcg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcggcatagagacacttatgaaagtagggaatcttattcagaaagggattcccgtagtcg 60
Query: 585 gtatgaccatgaatatggtaggaagcgaaacagatatgaaggttccagaagaacgcctgg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtatgaccatgaatatggtaggaagcgaaacagatatgaaggttccagaagaacgcctgg 120
Query: 645 caggtctgactgggatgatggtagatgggaatgggaagatactccacggagagatagttc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caggtctgactgggatgatggtagatgggaatgggaagatactccacggagagatagttc 180
Query: 705 tagacgtcatcaaccttcaccatccccaatgttcgttggtgcctcacctgatgcacgatt 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagacgtcatcaaccttcaccatccccaatgttcgttggtgcctcacctgatgcacgatt 240
Query: 765 agtttctccatggttggggggccacactccccattcatcatttacttcatcttcaccatg 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agtttctccatggttggggggccacactccccattcatcatttacttcatcttcaccatg 300
Query: 825 ggaccatgtttctccctctcctattccaatacgtgcttcaggatcctcagtcaaatcttc 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggaccatgtttctccctctcctattccaatacgtgcttcaggatcctcagtcaaatcttc 360
Query: 885 tctttctggacataatggaaggtcacatagaccgaatttttcttcaggaacttcaaatac 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctttctggacataatggaaggtcacatagaccgaatttttcttcaggaacttcaaatac 420
Query: 945 atatgaggatgaagtagcggataggtccttgggtgaagagcacaagtatgagattactga 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atatgaggatgaagtagcggataggtccttgggtgaagagcacaagtatgagattactga 480
Query: 1005 aagcatgcgccgagagatggaatacgatgctgaccgagcatggtatgata 1054
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 481 aagcatgcgccgagagatggaatacgatgctgagcgagcatggtatgata 530
>gnl|LJGI|TC63592
Length = 726
Score = 920 bits (464), Expect = 0.0
Identities = 464/464 (100%)
Strand = Plus / Plus
Query: 1 atggagagtgctggaactggtgcttccggagtcgttgacttagacaagatgacggagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atggagagtgctggaactggtgcttccggagtcgttgacttagacaagatgacggagaca 322
Query: 61 ctggaaccggagaagtcttcaggtggcggtctctatgttcctgggaaggatagagtggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctggaaccggagaagtcttcaggtggcggtctctatgttcctgggaaggatagagtggtg 382
Query: 121 tacgttgctcccgaaagaaaatctcgcttaggacttgatgcccttgcgagtgcgaaacgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tacgttgctcccgaaagaaaatctcgcttaggacttgatgcccttgcgagtgcgaaacgg 442
Query: 181 ggaggggctcagtatgatgggggattcaaggtgcctaaagaaagaaccatgtctattgcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggaggggctcagtatgatgggggattcaaggtgcctaaagaaagaaccatgtctattgcg 502
Query: 241 gcctcggcggatgatgaggataagtctgagagttctgttgttgatgatggtgggcatgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcctcggcggatgatgaggataagtctgagagttctgttgttgatgatggtgggcatgcc 562
Query: 301 ggtacacgcagacatgctaagaggaggtatcgtgagacaatcagtgaaacgtcgcgtgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggtacacgcagacatgctaagaggaggtatcgtgagacaatcagtgaaacgtcgcgtgca 622
Query: 361 gaaagttctctgtctgaagatcgctatggtgatacaccggggtcccgatcaactgagcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaaagttctctgtctgaagatcgctatggtgatacaccggggtcccgatcaactgagcat 682
Query: 421 atgggttcagatgtccgtgcctcgccttctgaatatgacaggga 464
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atgggttcagatgtccgtgcctcgccttctgaatatgacaggga 726
>gnl|LJGI|TC74403 homologue to UniRef100_A7QBN2 Cluster: Chromosome chr1 scaffold_75,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_75, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 714
Score = 652 bits (329), Expect = 0.0
Identities = 525/589 (89%), Gaps = 1/589 (0%)
Strand = Plus / Plus
Query: 2423 caaagaaagaagtccctaaactattgattcttcccatatactctcaacttcctgctgact 2482
|||||||| |||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 60 caaagaaacaagttcctaaactattgatccttcccatatactctcaactccctgctgact 119
Query: 2483 tgcaagcaaaaatatttgagaaagctgaagatggagcccgtaaatgcattgtcgccacta 2542
||||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 120 tgcaagccaaaatttttcagaaagctgaagatggagcccgaaaatgcattgtcgccacta 179
Query: 2543 atattgcagagacatcgttgactgttgatggtatctactatgtcatagatacaggctatg 2602
|||||||||||||||| |||||||| || || || ||||||||||||||||||||||||
Sbjct: 180 atattgcagagacatccttgactgtggacggcattcactatgtcatagatacaggctatg 239
Query: 2603 gtaaaatgaaggtgtataaccctaggatgggtatggatgctctccaagtcttccctgtta 2662
|||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||
Sbjct: 240 gtaaaatgaaggtgtataaccctaggttgggcatggacgctctccaagtcttcccagtta 299
Query: 2663 gccgtgctgctgctgaccagcgtgctggtcgagctggtagaactggacctggtacgtgct 2722
||||||||||||| |||||||||||||||||||| || ||||||||||| ||||| ||||
Sbjct: 300 gccgtgctgctgcggaccagcgtgctggtcgagccggcagaactggacccggtacttgct 359
Query: 2723 atcgcctgtatactgagagtgcttacctaaatgaaatgttgcccagtcctgttccagaaa 2782
|||| |||||||||||||| |||||||| ||||| ||| | |||||||| |||||||| |
Sbjct: 360 atcggctgtatactgagagcgcttacctgaatgagatgcttcccagtcccgttccagaga 419
Query: 2783 ttcaaaggactaaccttggcaatgtggtcttgctgctgaaatctcttaaagttgaaaact 2842
| || ||| | ||||| |||| ||| |||||||||||||||| || | ||||||| ||
Sbjct: 420 tccagagggccaacctcagcaacgtgatcttgctgctgaaatccctcagagttgaagacg 479
Query: 2843 tacttgattttgatttcatggatccacctccacaagataatattctcaactctatgtacc 2902
| |||||||| ||||||||||||||||| || | |||||| || ||||||||||||||||
Sbjct: 480 tgcttgatttcgatttcatggatccacccccgcgagataacatcctcaactctatgtacc 539
Query: 2903 agctgtgggtattgggggcccttaacaatgtagggggattaactgatcttggctggaaaa 2962
|| ||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||| |||
Sbjct: 540 agttgtgggtgttgggagccctgaacaatgtaggaggattaaccgatctcggctgg-aaa 598
Query: 2963 tggttgagtttccacttgaccctccgcttgctaagatgcttttgatggg 3011
|||| ||||||||||| ||||||||||| || ||||||||| |||||||
Sbjct: 599 tggtcgagtttccactcgaccctccgctcgcgaagatgcttctgatggg 647
>gnl|LJGI|BP043658 homologue to UniRef100_A7QBN2 Cluster: Chromosome chr1 scaffold_75,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_75, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 424
Score = 535 bits (270), Expect = e-151
Identities = 381/416 (91%), Gaps = 4/416 (0%)
Strand = Plus / Plus
Query: 1650 agaagctgtgagtgagtttgctaagtcaaaaaccatggcagagcaaaggcaatatctgcc 1709
|||||| ||||||||||| |||||||||||| ||||| |||||||||||||||| |||||
Sbjct: 10 agaagccgtgagtgagtt-gctaagtcaaaatccatgtcagagcaaaggcaatacctgcc 68
Query: 1710 aattttttcagtgcgagaagagttattacaggtgattcgtgaaaatcaggtggtggtagt 1769
||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct: 69 aattttttcagtgcgagaagagttattgcaggtcattcgcgaaaatcaggtcgtggtagt 128
Query: 1770 ggttggagaaactggttcaggaaaaacaacgcaattgacacagtatcttcacgaggatgg 1829
||||||||||||||||||||||||| |||| |||||| ||||||||||||| ||||||||
Sbjct: 129 ggttggagaaactggttcaggaaaatcaacccaattggcacagtatcttcatgaggatgg 188
Query: 1830 ctttactataggtggc---atagtaggttgcacccaaccaaggcgtgtggcagctatgag 1886
|| |||| ||||||| || ||||||||||| || || ||||||||||||||||||||
Sbjct: 189 ctatactgtaggtggtggtattgtaggttgcacgcagccgaggcgtgtggcagctatgag 248
Query: 1887 tgttgctaagagagttagcgaggagatggaaacagagttgggcgataaagttggttatgc 1946
|||||||||||||||||| |||||||||||||| |||||||| ||| |||||||||||||
Sbjct: 249 tgttgctaagagagttagtgaggagatggaaaccgagttgggtgatcaagttggttatgc 308
Query: 1947 tatccgttttgaagatgtgacggggccaaataccattataaagtacatgacagatggggt 2006
|||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||
Sbjct: 309 tatccgttttgaagatgtcactggcccaaataccattataaagtacatgactgatggggt 368
Query: 2007 acttctacgtgaaacactcaaagactctgaactagacaaataccgggttattgtca 2062
|||||| || |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 369 acttctgcgcgaaacactcaaagactctgatctagacaaatatcgggttattgtca 424