Miyakogusa Predicted Gene
- Lj3g3v1543490.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1543490.1 tr|A9TJS1|A9TJS1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_170480,24.84,8e-16,PPR,Pentatricopeptide repeat; PPR:
pentatricopeptide repeat domain,Pentatricopeptide repeat;
PPR_2,P,CUFF.42785.1
(882 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68036 weakly similar to UniRef100_A7P0Y7 Cluster: Chr... 1542 0.0
gnl|LJGI|TC70888 similar to UniRef100_A7P0Y7 Cluster: Chromosome... 565 e-160
>gnl|LJGI|TC68036 weakly similar to UniRef100_A7P0Y7 Cluster: Chromosome chr19
scaffold_4, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (44%)
Length = 944
Score = 1542 bits (778), Expect = 0.0
Identities = 812/822 (98%), Gaps = 1/822 (0%)
Strand = Plus / Plus
Query: 61 ttgaagggaatgaatatggtgccgacaacaggcatgtacaatgccataatggcagaatgt 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 8 ttgaagggaatgaatatggtgc-gacaacaggcatgtacaatgccataatggcagaatgt 66
Query: 121 tttcgagagagaaacattagtgatggggtgagggtctttgaacaaatgcaatgtgctgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 tttcgagagagaaacattagtgatggggtgagggtctttgaacaaatgcaatgtgctgat 126
Query: 181 ataaaacctgattcacagacttacagccatctgatttccaactctgaaactgaagaagat 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ataaaacgtgattcacagacttacagccatctgatttccaactctgaaactgaagaagat 186
Query: 241 atagtaaagtattatgaagaactgaagcattctggaatgagagctacaaagcaaattttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 atagtaaagtattatgaagaactgaagcattctggaatgagagctacaaagcaaattttc 246
Query: 301 acggcactcataaatgcttacgcttcgtgtggacagttggagaaagcaaaacaggtaatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 acggcactcataaatgcttacgcttcgtgtggacagttggagaaagcaaaacaggtaatc 306
Query: 361 ttagacccattgataccaatgagaagcttgaaccaaatcaagagtgttcttgtctcagtt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtagacccattgataccaatgagaagcttgaaccaaatcaagagtgttcttgtctcagtt 366
Query: 421 cttgcatcacatgggcaattgtttgaggcttttcttatttacaatgaaatcaagcaagtt 480
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 367 cttgcatcacatgggcaattgtttgaggcttttcttatttacgatgaaatcaagcaagct 426
Query: 481 ggacacactctagagccaaaagatgttatgagtctcattgagcacattcgttccgacgga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggacacactctagagccaaaagatgttatgagtctcattgagcacattcgttccgacgga 486
Query: 541 gagttggataggttgcttctgctacttgaggaatcgaaaggtacagaccattggaatgat 600
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 487 gagttggataggttgctactgctacttgaggaattgaaaggtacagaccattggaatgat 546
Query: 601 gcttgctgcagaatcatcttgtattgtatttggaataaacagttaagttctgctattgac 660
||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct: 547 gcttgctgcagaatcatcttgtactgtatttggaatgaacatttaagttctgctattgac 606
Query: 661 ttgtgtaagctcctcaaggaaaagctcgaaagtgatgaaaaatttatggaggttctcttt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttgtgtaagctcctcaaggaaaagctcgaaagtgatgaaaaatttatggaggttctcttt 666
Query: 721 gataaggtattttcgctaattgaacggtcagagtcgaatcatctgaacacttgtctcaat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gataaggtattttcgctaattgaacggtcagagtcgaatcatctgaacacttgtctcaat 726
Query: 781 ttgctttcagaaatcagggataaaattggcactttgccttcacagaaatgttatgattct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ttgctttcagaaatcagggataaaattggcactttgccttcacagaaatgttatgattct 786
Query: 841 ctattttgtgctcctgctgacgccattgattctgaatgaggc 882
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ctattttgtgctcctgctgacgccattgattctgaatgaggc 828
>gnl|LJGI|TC70888 similar to UniRef100_A7P0Y7 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 524
Score = 565 bits (285), Expect = e-160
Identities = 294/297 (98%)
Strand = Plus / Plus
Query: 586 gaccattggaatgatgcttgctgcagaatcatcttgtattgtatttggaataaacagtta 645
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 1 gaccattggaatgatgcttgctgcagaatcatcttgtactgtatttggaatgaacattta 60
Query: 646 agttctgctattgacttgtgtaagctcctcaaggaaaagctcgaaagtgatgaaaaattt 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agttctgctattgacttgtgtaagctcctcaaggaaaagctcgaaagtgatgaaaaattt 120
Query: 706 atggaggttctctttgataaggtattttcgctaattgaacggtcagagtcgaatcatctg 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atggaggttctctttgataaggtattttcgctaattgaacggtcagagtcgaatcatctg 180
Query: 766 aacacttgtctcaatttgctttcagaaatcagggataaaattggcactttgccttcacag 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aacacttgtctcaatttgctttcagaaatcagggataaaattggcactttgccttcacag 240
Query: 826 aaatgttatgattctctattttgtgctcctgctgacgccattgattctgaatgaggc 882
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaatgttatgattctctattttgtgctcctgctgacgccattgattctgaatgaggc 297