Miyakogusa Predicted Gene
- Lj3g3v1541430.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1541430.1 Non Chatacterized Hit- tr|F6I1L4|F6I1L4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,65.62,2e-18,seg,NULL; PRE-MRNA CLEAVAGE COMPLEX
II,NULL,NODE_22172_length_1694_cov_64.429161.path2.1
(1614 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP064656 homologue to UniRef100_Q9ZS85 Cluster: T4B21.1... 1116 0.0
gnl|LJGI|BW622639 892 0.0
gnl|LJGI|BP083927 similar to UniRef100_Q6IGC4 Cluster: HDC06630;... 291 7e-78
gnl|LJGI|AV408315 similar to UniRef100_Q9ZS85 Cluster: T4B21.1 p... 234 1e-60
>gnl|LJGI|BP064656 homologue to UniRef100_Q9ZS85 Cluster: T4B21.1 protein; n=1;
Arabidopsis thaliana|Rep: T4B21.1 protein - Arabidopsis
thaliana (Mouse-ear cress), partial (4%)
Length = 580
Score = 1116 bits (563), Expect = 0.0
Identities = 579/582 (99%), Gaps = 3/582 (0%)
Strand = Plus / Plus
Query: 71 ctcctcatcatgcagttgattatggagtagttaaaacattaggtagagaagaagagttga 130
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ctcctcatcatgcagttgattatggagtagttaa--cattaggtagagaagaagagttga 58
Query: 131 gtgaatggcagagaaagcagttttctggtgatagtcggaagagatttcaaactatgacat 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 gtgaatggcagagaaagcagttttctggtgatagtcggaagagatttcaaactatgacat 118
Query: 191 acagtctta-gtaacggacaacagcgtcaaagtcctagagctctgattgatgcatatgga 249
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 acagtcttatgtaacggacaacagcgtcaaagtcctagagctctgattgatgcatatgga 178
Query: 250 agtgacaaaagtcaagaaacttctagcagtaaacctttcttagttaaacggcttggtaga 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 agtgacaaaagtcaagaaacttctagcagtaaacctttcttagttaaacggcttggtaga 238
Query: 310 aatggtatagacaaggtttcgacaacgtcatggcagaatactgaagaggaggagttcgat 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aatggtatagacaaggtttcgacaacgtcatggcagaatactgaagaggaggagttcgat 298
Query: 370 tgggaagatatgagtccaacattagtagaacataatagaaataatggttttctgcagtca 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgggaagatatgagtccaacattagtagaacataatagaaataatggttttctgcagtca 358
Query: 430 actactggtttcaccacggaaatgccagttactgttgcagctaatgcaatttcttctgag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 actactggtttcaccacggaaatgccagttactgttgcagctaatgcaatttcttctgag 418
Query: 490 caagataccaggacgggttggtctagtgggtctcagcttcttccggttgatgattcctca 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 caagataccaggacgggttggtctagtgggtctcagcttcttccggttgatgattcctca 478
Query: 550 gttatagccgaagatgtattcgcctcttcagcttattctcgtgtaccactgggtcaggta 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gttatagccgaagatgtattcgcctcttcagcttattctcgtgtaccactgggtcaggta 538
Query: 610 tctggattccagaatccaataaatcagagtctaggctctggt 651
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tctggattccagaatccaataaatcagagtctaggctctggt 580
>gnl|LJGI|BW622639
Length = 474
Score = 892 bits (450), Expect = 0.0
Identities = 459/462 (99%)
Strand = Plus / Plus
Query: 1019 gtgagcagtcattgtacaatgttgaggacaaagactttagtaaagggaacctatatcaat 1078
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 13 gtgagcagtcattgtacaatgttgaggacaaagactttagtaaagggagcctatatcaat 72
Query: 1079 tgcctaatcagcaatctggtctggtttcatctaacccacaaaaccgaggacaagcaccac 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 73 tgcctaatcagcaatctggtctggtttcatctaacccacaaaaccgaggacaagcacctc 132
Query: 1139 aactacagttttttccctctcaggatccggcagcatcacaatttagtgggagctcttttc 1198
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 133 aactacagttttttccctctcaggatccggcagcatcacgatttagtgggagctcttttc 192
Query: 1199 aaggacatggtggtgctagaaatacacatttgtcaaatgcgccaccaaacatgccattcc 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaggacatggtggtgctagaaatacacatttgtcaaatgcgccaccaaacatgccattcc 252
Query: 1259 ctttaccaggccaaaatatggtgaataactctttacattttctggggggagccttgcgac 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctttaccaggccaaaatatggtgaataactctttacattttctggggggagccttgcgac 312
Query: 1319 ccttacatccagcccggccgccattgctacctcatcctaatcatactcctcttgtttcaa 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ccttacatccagcccggccgccattgctacctcatcctaatcatactcctcttgtttcaa 372
Query: 1379 gtcaacggccaactgttccatattctaatttgtttagttcactcgtcgcccaaggtgtaa 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtcaacggccaactgttccatattctaatttgtttagttcactcgtcgcccaaggtgtaa 432
Query: 1439 tctcatttcctaatcaggctcctgcacaggattctgttggaa 1480
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tctcatttcctaatcaggctcctgcacaggattctgttggaa 474
>gnl|LJGI|BP083927 similar to UniRef100_Q6IGC4 Cluster: HDC06630; n=1; Drosophila
melanogaster|Rep: HDC06630 - Drosophila melanogaster
(Fruit fly), partial (13%)
Length = 368
Score = 291 bits (147), Expect = 7e-78
Identities = 150/151 (99%)
Strand = Plus / Plus
Query: 1210 ggtgctagaaatacacatttgtcaaatgcgccaccaaacatgccattccctttaccaggc 1269
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ggtgctcgaaatacacatttgtcaaatgcgccaccaaacatgccattccctttaccaggc 277
Query: 1270 caaaatatggtgaataactctttacattttctggggggagccttgcgacccttacatcca 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 caaaatatggtgaataactctttacattttctggggggagccttgcgacccttacatcca 337
Query: 1330 gcccggccgccattgctacctcatcctaatc 1360
|||||||||||||||||||||||||||||||
Sbjct: 338 gcccggccgccattgctacctcatcctaatc 368
>gnl|LJGI|AV408315 similar to UniRef100_Q9ZS85 Cluster: T4B21.1 protein; n=1;
Arabidopsis thaliana|Rep: T4B21.1 protein - Arabidopsis
thaliana (Mouse-ear cress), partial (4%)
Length = 342
Score = 234 bits (118), Expect = 1e-60
Identities = 145/154 (94%)
Strand = Plus / Plus
Query: 295 aaacggcttggtagaaatggtatagacaaggtttcgacaacgtcatggcagaatactgaa 354
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 185 aaacggctgggtagaaatggtatagacaaggttttgacaacgtcatggcagaatactgaa 244
Query: 355 gaggaggagttcgattgggaagatatgagtccaacattagtagaacataatagaaataat 414
||||||||||| |||||| |||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 245 gaggaggagtttaattggggagatatgagtccaaaattagcagaacataatacaaataat 304
Query: 415 ggttttctgcagtcaactactggtttcaccacgg 448
|||| |||||||||||||||||||||||||||||
Sbjct: 305 ggttatctgcagtcaactactggtttcaccacgg 338
Score = 206 bits (104), Expect = 3e-52
Identities = 166/187 (88%), Gaps = 6/187 (3%)
Strand = Plus / Plus
Query: 78 tcatgcagttgattatggagtagttaaaacattaggtagagaagaagagttgagtgaatg 137
||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||
Sbjct: 1 tcatggagttgattatggactagttaaaaaattaggtagagaagtagagttgagtgaatg 60
Query: 138 gcagagaaagcagttttctggtgatagtcggaagagatttcaaact------atgacata 191
|||||||||||||||||||||||| ||| |||||||||||||||| | |||||
Sbjct: 61 gcagagaaagcagttttctggtgaaggtccgaagagatttcaaacttctaagacaacata 120
Query: 192 cagtcttagtaacggacaacagcgtcaaagtcctagagctctgattgatgcatatggaag 251
|||||||| ||| |||||||||||||||||||| |||||||| |||||||||| |||| |
Sbjct: 121 cagtcttattaatggacaacagcgtcaaagtccaagagctctaattgatgcatttggagg 180
Query: 252 tgacaaa 258
|||||||
Sbjct: 181 tgacaaa 187