Miyakogusa Predicted Gene
- Lj3g3v1461480.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1461480.1 tr|A9SXN2|A9SXN2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_85367
,36.54,0.000000000000002,EF-hand,NULL; EF_HAND_2,EF-HAND 2;
UIM,Ubiquitin interacting motif; no description,EF-hand-like
doma,CUFF.42646.1
(876 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO015560 similar to UniRef100_A7PYF6 Cluster: Chromosom... 561 e-159
gnl|LJGI|GO005909 182 2e-45
>gnl|LJGI|GO015560 similar to UniRef100_A7PYF6 Cluster: Chromosome chr15 scaffold_37,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_37, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (33%)
Length = 814
Score = 561 bits (283), Expect = e-159
Identities = 326/347 (93%)
Strand = Plus / Minus
Query: 216 tactcggagtaaaacgaaagggaaagagaaggttgcagatgatgataaagagtatcaacc 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 tactcggagtaaaacgaaagggaaagagaaggttgcagatgatgataaagagtatcaacc 755
Query: 276 cgaagacgaggaagaacccggttcaagttcttcaagtgaagaagatgggcatgacaaaga 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 cgaagacgaggaagaacccggttcaagttcttcaagtgaagaagatgggcatgacaaaga 695
Query: 336 tgatgactttgctcctcaaaatgcttctgggtcacggaaacgaaaggtgatgaacaaaag 395
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 694 tgatgactttgctcctcaaaatgcttctgggtcgcggaaacgaaaggtgatgaacaaaag 635
Query: 396 tttgaagatgaaagggagtgtctctaggaagaagcgtggtggtggttcagagtgtatnnn 455
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tttgaagatgaaagggagtgtctctaggaagaagcgtggtggtggttcagagtgtattga 575
Query: 456 nnnnnnnnnnnnnnnnnctttgaggcaggcaattgcgctttccctgcaagactctgcaga 515
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tgatgatgatgatgatgctttgaggcaggcaattgcgctttccctgcaagactctgcaga 515
Query: 516 agtttcatattgctctgacaagagtgtggtgagcgtcagcaaggctg 562
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agtttcatattgctctgacaagagtgtggtgagcgtcagcaaggctg 468
Score = 496 bits (250), Expect = e-139
Identities = 257/258 (99%), Gaps = 1/258 (0%)
Strand = Plus / Minus
Query: 619 tcgtttactagtaggctgcaaatgactgaggatgaactgattgtacacttcttccagctt 678
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 411 tcgtttactagtaggctgcaaatgactgaggatgaac-gattgtacacttcttccagctt 353
Query: 679 gatgaagcaggaaaaggatgtttaggtataagggatatagaaagggcagctacagctcat 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gatgaagcaggaaaaggatgtttaggtataagggatatagaaagggcagctacagctcat 293
Query: 739 gattttatgtggtcagacaaagagttggctgatatgattcgttgctttgatagtgatgga 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gattttatgtggtcagacaaagagttggctgatatgattcgttgctttgatagtgatgga 233
Query: 799 gaccgcaagctaagtcttgatgatttccggaagattgctgttcgttgcaacatgattaaa 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gaccgcaagctaagtcttgatgatttccggaagattgctgttcgttgcaacatgattaaa 173
Query: 859 gggcctgaaaattcttga 876
||||||||||||||||||
Sbjct: 172 gggcctgaaaattcttga 155
>gnl|LJGI|GO005909
Length = 138
Score = 182 bits (92), Expect = 2e-45
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 atgccaaaacgcaacacatccaattcagaatcggagggaacctcaagttcaggctcagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 atgccaaaacgcaacacatccaattcagaatcggagggaacctcaagttcaggctcagac 106
Query: 61 tcagaggaggcagagaccgtgggcaatgggaa 92
||||||||||||||||||||||||||||||||
Sbjct: 107 tcagaggaggcagagaccgtgggcaatgggaa 138