Miyakogusa Predicted Gene
- Lj3g3v1411740.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1411740.1 tr|Q6JAD5|Q6JAD5_MAIZE TATA sequence-binding
protein 1 (TBP-1) OS=Zea mays GN=Z477F24.5 PE=3
SV=1,31.96,0.0000000009,TATA-box binding protein-like,NULL; no
description,Beta2-adaptin/TBP, C-terminal domain;
TATA_bind_p,CUFF.42607.1
(606 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59431 homologue to UniRef100_Q42808 Cluster: TATA-box... 1086 0.0
gnl|LJGI|TC70266 homologue to UniRef100_Q42808 Cluster: TATA-box... 745 0.0
gnl|LJGI|AU251937 homologue to UniRef100_A2ZM22 Cluster: TATA-bo... 496 e-140
gnl|LJGI|TC70483 homologue to UniRef100_A7P0B8 Cluster: TATA-box... 327 5e-89
gnl|LJGI|BP037881 homologue to UniRef100_A7P0B8 Cluster: TATA-bo... 121 5e-27
>gnl|LJGI|TC59431 homologue to UniRef100_Q42808 Cluster: TATA-box-binding protein;
n=1; Glycine max|Rep: TATA-box-binding protein - Glycine
max (Soybean), partial (92%)
Length = 773
Score = 1086 bits (548), Expect = 0.0
Identities = 551/552 (99%)
Strand = Plus / Plus
Query: 1 atggctgaccaaggattggaagggagccagccggttgatctacagaagcacccttctggg 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 222 atggctgaccaaggattggaaggaagccagccggttgatctacagaagcacccttctggg 281
Query: 61 attgtgcctaccctccaaaatatagtgtcaactgtcaatttggactgtaagttggacctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 attgtgcctaccctccaaaatatagtgtcaactgtcaatttggactgtaagttggacctc 341
Query: 121 aaaaccattgcacttcaggctcgtaatgcagagtataatcccaagcgttttgctgccgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aaaaccattgcacttcaggctcgtaatgcagagtataatcccaagcgttttgctgccgtc 401
Query: 181 atcatgaggatcagggaaccaaaaacaactgcacttatctttgcttctggcaagatggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atcatgaggatcagggaaccaaaaacaactgcacttatctttgcttctggcaagatggtt 461
Query: 241 tgtactggagctaagagtgagcaacagtcgaaattggcagcaaggaagtatgctcgtatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgtactggagctaagagtgagcaacagtcgaaattggcagcaaggaagtatgctcgtatt 521
Query: 301 attcaaaaacttggtttcaacgctaaatttaaggatttcaagattcagaacattgttggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 attcaaaaacttggtttcaacgctaaatttaaggatttcaagattcagaacattgttggt 581
Query: 361 tcttgtgatgtcaagttcccaatacggctggagggtcttgcatattcccatggtgctttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tcttgtgatgtcaagttcccaatacggctggagggtcttgcatattcccatggtgctttc 641
Query: 421 tccagttatgaaccagagctgtttccagggcttatataccgtatgaagcaacccaagatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tccagttatgaaccagagctgtttccagggcttatataccgtatgaagcaacccaagatt 701
Query: 481 gtcttgcttatatttgtctctggaaaaattgttctaacaggggctaaggtgagagatgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gtcttgcttatatttgtctctggaaaaattgttctaacaggggctaaggtgagagatgag 761
Query: 541 acttacacagcc 552
||||||||||||
Sbjct: 762 acttacacagcc 773
>gnl|LJGI|TC70266 homologue to UniRef100_Q42808 Cluster: TATA-box-binding protein;
n=1; Glycine max|Rep: TATA-box-binding protein - Glycine
max (Soybean), complete
Length = 953
Score = 745 bits (376), Expect = 0.0
Identities = 547/604 (90%)
Strand = Plus / Plus
Query: 1 atggctgaccaaggattggaagggagccagccggttgatctacagaagcacccttctggg 60
|||||||| |||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct: 124 atggctgagcaaggattggaagggagccaacctgtggatcttcagaagcacccttctggg 183
Query: 61 attgtgcctaccctccaaaatatagtgtcaactgtcaatttggactgtaagttggacctc 120
|||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct: 184 attgtgcctacccttcaaaatattgtgtcaactgtcaatttggactgtaagctggagctt 243
Query: 121 aaaaccattgcacttcaggctcgtaatgcagagtataatcccaagcgttttgctgccgtc 180
||| | ||||||||||| |||||||||||||| | ||||| || ||||||||||| ||
Sbjct: 244 aaatcgattgcacttcaagctcgtaatgcagaattcaatccaaatcgttttgctgctgtg 303
Query: 181 atcatgaggatcagggaaccaaaaacaactgcacttatctttgcttctggcaagatggtt 240
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 304 attatgaggatcagggaaccaaaaacaactgcacttatttttgcgtctggcaagatggtc 363
Query: 241 tgtactggagctaagagtgagcaacagtcgaaattggcagcaaggaagtatgctcgtatt 300
||||||||||||||||||||| ||||||| | |||||||||||| ||||||||| | |||
Sbjct: 364 tgtactggagctaagagtgaggaacagtctagattggcagcaagaaagtatgctagaatt 423
Query: 301 attcaaaaacttggtttcaacgctaaatttaaggatttcaagattcagaacattgttggt 360
|| ||||| ||||| ||| || |||||||||||||| |||||||| || || |||||
Sbjct: 424 atccaaaagcttggcttcccagccaaatttaaggattttaagattcaaaatatagttggc 483
Query: 361 tcttgtgatgtcaagttcccaatacggctggagggtcttgcatattcccatggtgctttc 420
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 484 tcttgtgatgtcaagttccccatacggcttgagggtcttgcatattcccatggtgctttc 543
Query: 421 tccagttatgaaccagagctgtttccagggcttatataccgtatgaagcaacccaagatt 480
|| |||||||||||||||||||||||||| || || || || ||||||||||| |||||
Sbjct: 544 tcaagttatgaaccagagctgtttccaggactgatctatcgaatgaagcaaccgaagata 603
Query: 481 gtcttgcttatatttgtctctggaaaaattgttctaacaggggctaaggtgagagatgag 540
||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||
Sbjct: 604 gtcttgcttatatttgtctctggaaaaattgttctgacaggagccaaggtgagggatgag 663
Query: 541 acttacacagcctttgagaacatatatcctgtgcttactgagttcaggaaaaaccaacaa 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 acttacacagcctttgaaaacatatatcctgtgcttactgagttcaggaaaaaccaacaa 723
Query: 601 tgat 604
||||
Sbjct: 724 tgat 727
>gnl|LJGI|AU251937 homologue to UniRef100_A2ZM22 Cluster: TATA-box-binding protein;
n=1; Oryza sativa Indica Group|Rep: TATA-box-binding
protein - Oryza sativa subsp. indica (Rice), partial
(32%)
Length = 322
Score = 496 bits (250), Expect = e-140
Identities = 250/250 (100%)
Strand = Plus / Plus
Query: 177 cgtcatcatgaggatcagggaaccaaaaacaactgcacttatctttgcttctggcaagat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtcatcatgaggatcagggaaccaaaaacaactgcacttatctttgcttctggcaagat 60
Query: 237 ggtttgtactggagctaagagtgagcaacagtcgaaattggcagcaaggaagtatgctcg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtttgtactggagctaagagtgagcaacagtcgaaattggcagcaaggaagtatgctcg 120
Query: 297 tattattcaaaaacttggtttcaacgctaaatttaaggatttcaagattcagaacattgt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tattattcaaaaacttggtttcaacgctaaatttaaggatttcaagattcagaacattgt 180
Query: 357 tggttcttgtgatgtcaagttcccaatacggctggagggtcttgcatattcccatggtgc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggttcttgtgatgtcaagttcccaatacggctggagggtcttgcatattcccatggtgc 240
Query: 417 tttctccagt 426
||||||||||
Sbjct: 241 tttctccagt 250
>gnl|LJGI|TC70483 homologue to UniRef100_A7P0B8 Cluster: TATA-box-binding protein;
n=1; Vitis vinifera|Rep: TATA-box-binding protein -
Vitis vinifera (Grape), partial (27%)
Length = 1350
Score = 327 bits (165), Expect = 5e-89
Identities = 178/181 (98%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 427 tatgaaccagagctgtttccagggcttatataccgtatgaagcaacccaagatt-gtctt 485
||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 435 tatgaaccagagccgtttccagggcttatataccgtatgaagcaaccccagattcgtctt 494
Query: 486 gcttatatttgtctctggaaaaattgttctaacaggggctaaggtgagagatgagactta 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gcttatatttgtctctggaaaaattgttctaacaggggctaaggtgagagatgagactta 554
Query: 546 cacagcctttgagaacatatatcctgtgcttactgagttcaggaaaaaccaacaatgata 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cacagcctttgagaacatatatcctgtgcttactgagttcaggaaaaaccaacaatgata 614
Query: 606 a 606
|
Sbjct: 615 a 615
>gnl|LJGI|BP037881 homologue to UniRef100_A7P0B8 Cluster: TATA-box-binding protein;
n=1; Vitis vinifera|Rep: TATA-box-binding protein -
Vitis vinifera (Grape), partial (10%)
Length = 362
Score = 121 bits (61), Expect = 5e-27
Identities = 67/69 (97%)
Strand = Plus / Minus
Query: 527 aggtgagagatgagacttacacagcctttgagaacatatatcctgtgcttactgagttca 586
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 362 aggtgagagatgagacttaccccgcctttgagaacatatatcctgtgcttactgagttca 303
Query: 587 ggaaaaacc 595
|||||||||
Sbjct: 302 ggaaaaacc 294