Miyakogusa Predicted Gene
- Lj3g3v1404130.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1404130.1 tr|F2CQ55|F2CQ55_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,30.72,4e-18,DUF966,Protein
of unknown function DUF966; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.42563.1
(1392 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81062 1039 0.0
gnl|LJGI|TC73313 184 1e-45
gnl|LJGI|BP055161 176 2e-43
gnl|LJGI|BP043886 155 9e-37
gnl|LJGI|TC81287 155 9e-37
gnl|LJGI|TC76992 similar to UniRef100_A0KCX4 Cluster: Binding-pr... 155 9e-37
gnl|LJGI|TC58099 weakly similar to UniRef100_A4IG17 Cluster: LOC... 119 5e-26
gnl|LJGI|TC70292 107 2e-22
>gnl|LJGI|TC81062
Length = 930
Score = 1039 bits (524), Expect = 0.0
Identities = 539/544 (99%)
Strand = Plus / Plus
Query: 753 gatctcatgtggctcgatatcagtgaaaaaccacagttttggccttattccttcctataa 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatctcatgtggctcgatatcagtgaaaaaccacagttttggccttattccttcctataa 60
Query: 813 gcataggttttctgattcaaaattcccttctccgctgttctccacttcttttatgttagg 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcataggttttctgattcaaaattcccttctccgctgttctccacttcttttatgttagg 120
Query: 873 ggaatttgattgcttagcagagaatccaaagctgatgaatcttaggttggaagacaaaga 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggaatttgattgcttagcagagaatccaaagctgatgaatcttaggttggaagacaaaga 180
Query: 933 atactttagtgggagcttaattgagactaaattgaaggaaggagaggcacataaagttct 992
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 181 atactttagtgggagcttaattgagactaaactgaaggaaggagaggcacataaagttct 240
Query: 993 aaaacgttcttcttcctacaatgatgaaaggacatataaagaccagaaaccacaagaaga 1052
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaacgttcttcttcctacaatgatgaaaggacatataaagaccagaaaccacaagaaga 300
Query: 1053 caaagaggaaacatcctcaggacattcaaaatgcattccacgatcaatcaaggcttcatt 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caaagaggaaacatcctcaggacattcaaaatgcattccacgatcaatcaaggcttcatt 360
Query: 1113 gaccaagcatccacgaagcgaatccatgaaatcccccatttctgatgggccaagaaactc 1172
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 361 gaccaagcatccacgaagcgaatccatgaaatcccccgtttctgatgggccaagaaactc 420
Query: 1173 atcggacagatttgatggattaggcatatcctcagtaacatctaacggtagcagcaaaag 1232
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atcggacggatttgatggatcaggcatatcctcagtaacatctaacggtagcagcaaaag 480
Query: 1233 aatctccgaaccttcatcagggaagaagcagtcaaagaggatagattcgtttagggaaga 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatctccgaaccttcatcagggaagaagcagtcaaagaggatagattcgtttagggaaga 540
Query: 1293 agag 1296
||||
Sbjct: 541 agag 544
>gnl|LJGI|TC73313
Length = 602
Score = 184 bits (93), Expect = 1e-45
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 1296 gtacttctctgattgtcaatttggcttctacgatgagtatcaactaaatgaaattaaaga 1355
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gtacttctctgattgtccatttggcttctacgatgagtatcaactaaatgaaattaaaga 290
Query: 1356 agagtgggctacttatgtgttaaagaattttgcctag 1392
|||||||||||||||||||||||||||||||||||||
Sbjct: 291 agagtgggctacttatgtgttaaagaattttgcctag 327
>gnl|LJGI|BP055161
Length = 504
Score = 176 bits (89), Expect = 2e-43
Identities = 95/97 (97%)
Strand = Plus / Minus
Query: 1296 gtacttctctgattgtcaatttggcttctacgatgagtatcaactaaatgaaattaaaga 1355
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 286 gtacttctctgattgtccatttggcttctacgatgaggatcaactaaatgaaattaaaga 227
Query: 1356 agagtgggctacttatgtgttaaagaattttgcctag 1392
|||||||||||||||||||||||||||||||||||||
Sbjct: 226 agagtgggctacttatgtgttaaagaattttgcctag 190
>gnl|LJGI|BP043886
Length = 554
Score = 155 bits (78), Expect = 9e-37
Identities = 93/98 (94%)
Strand = Plus / Minus
Query: 1295 agtacttctctgattgtcaatttggcttctacgatgagtatcaactaaatgaaattaaag 1354
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 390 agtacttctctgattgttaatttggcttctacgatgaggatcaactaaatgaaattaaag 331
Query: 1355 aagagtgggctacttatgtgttaaagaattttgcctag 1392
|||||||| ||||||||| ||||| |||||||||||||
Sbjct: 330 aagagtggactacttatgcgttaaggaattttgcctag 293
>gnl|LJGI|TC81287
Length = 1368
Score = 155 bits (78), Expect = 9e-37
Identities = 93/98 (94%)
Strand = Plus / Plus
Query: 1295 agtacttctctgattgtcaatttggcttctacgatgagtatcaactaaatgaaattaaag 1354
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 926 agtacttctctgattgttaatttggcttctacgatgaggatcaactaaatgaaattaaag 985
Query: 1355 aagagtgggctacttatgtgttaaagaattttgcctag 1392
|||||||| ||||||||| ||||| |||||||||||||
Sbjct: 986 aagagtggactacttatgcgttaaggaattttgcctag 1023
>gnl|LJGI|TC76992 similar to UniRef100_A0KCX4 Cluster: Binding-protein-dependent
transport systems inner membrane component; n=2;
Burkholderia cenocepacia|Rep: Binding-protein-dependent
transport systems inner membrane component - Burkholderia
cenocepacia (strain HI2424), partial (5%)
Length = 1195
Score = 155 bits (78), Expect = 9e-37
Identities = 93/98 (94%)
Strand = Plus / Plus
Query: 1295 agtacttctctgattgtcaatttggcttctacgatgagtatcaactaaatgaaattaaag 1354
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 792 agtacttctctgattgttaatttggcttctacgatgaggatcaactaaatgaaattaaag 851
Query: 1355 aagagtgggctacttatgtgttaaagaattttgcctag 1392
|||||||| ||||||||| ||||| |||||||||||||
Sbjct: 852 aagagtggactacttatgcgttaaggaattttgcctag 889
>gnl|LJGI|TC58099 weakly similar to UniRef100_A4IG17 Cluster: LOC563938 protein; n=1;
Danio rerio|Rep: LOC563938 protein - Danio rerio
(Zebrafish) (Brachydanio rerio), partial (4%)
Length = 960
Score = 119 bits (60), Expect = 5e-26
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1333 tatcaactaaatgaaattaaagaagagtgggctacttatgtgttaaagaattttgcctag 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatcaactaaatgaaattaaagaagagtgggctacttatgtgttaaagaattttgcctag 600
>gnl|LJGI|TC70292
Length = 715
Score = 107 bits (54), Expect = 2e-22
Identities = 102/118 (86%)
Strand = Plus / Plus
Query: 31 agaagctacaatagtggatttgtgtggcatgatctttctgaagatgatttaattttacca 90
||||||||||| | ||||||||||||||||||||| | ||||||||| | |||||||
Sbjct: 133 agaagctacaagaatggatttgtgtggcatgatctctgcgaagatgataaatctttacca 192
Query: 91 gcccatggaattgagtatgtcctcaaaggctctgagctctttgatgaatccaattcag 148
||||||||| | || |||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 193 tcccatggaaataagaatgtcctcaaaggctctgagctctttgacaaatccaactcag 250