Miyakogusa Predicted Gene
- Lj3g3v1403940.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1403940.1 tr|K1QEF6|K1QEF6_CRAGI E3 ubiquitin-protein
ligase Hakai OS=Crassostrea gigas PE=4
SV=1,54.55,0.00000003,ZF_RING_1,Zinc finger, RING-type, conserved
site; E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED,NULL,CUFF.42545.1
(336 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73713 similar to UniRef100_A7PNZ6 Cluster: Chromosome... 666 0.0
gnl|LJGI|TC57697 similar to UniRef100_A7PNZ6 Cluster: Chromosome... 666 0.0
gnl|LJGI|TC77487 similar to UniRef100_A7PNZ6 Cluster: Chromosome... 198 2e-50
>gnl|LJGI|TC73713 similar to UniRef100_A7PNZ6 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (40%)
Length = 1310
Score = 666 bits (336), Expect = 0.0
Identities = 336/336 (100%)
Strand = Plus / Plus
Query: 1 atgcttcagattcggcttagcaagactcctgcctcagaagggtcagcgggggtgaaggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 atgcttcagattcggcttagcaagactcctgcctcagaagggtcagcgggggtgaaggtg 66
Query: 61 tcacctgctgagactgttacagttgcatgccctgaccatctggtccttgctgatcttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 tcacctgctgagactgttacagttgcatgccctgaccatctggtccttgctgatcttcct 126
Query: 121 gttgcaaagggcattggggcagctactgctgcttcccttgtcaagactttgggccgaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gttgcaaagggcattggggcagctactgctgcttcccttgtcaagactttgggccgaaga 186
Query: 181 tcccgccgccagcttggcgagcgagtacatttctgtgttcgctgtgatttccccattgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tcccgccgccagcttggcgagcgagtacatttctgtgttcgctgtgatttccccattgct 246
Query: 241 atttatggacgactgagcccttgtgagcatgctttctgcctcgattgtgctagaagtgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atttatggacgactgagcccttgtgagcatgctttctgcctcgattgtgctagaagtgat 306
Query: 301 tcactgtgctacctgtgtgatgaacgaatccagaag 336
||||||||||||||||||||||||||||||||||||
Sbjct: 307 tcactgtgctacctgtgtgatgaacgaatccagaag 342
>gnl|LJGI|TC57697 similar to UniRef100_A7PNZ6 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (42%)
Length = 835
Score = 666 bits (336), Expect = 0.0
Identities = 336/336 (100%)
Strand = Plus / Plus
Query: 1 atgcttcagattcggcttagcaagactcctgcctcagaagggtcagcgggggtgaaggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atgcttcagattcggcttagcaagactcctgcctcagaagggtcagcgggggtgaaggtg 316
Query: 61 tcacctgctgagactgttacagttgcatgccctgaccatctggtccttgctgatcttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcacctgctgagactgttacagttgcatgccctgaccatctggtccttgctgatcttcct 376
Query: 121 gttgcaaagggcattggggcagctactgctgcttcccttgtcaagactttgggccgaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gttgcaaagggcattggggcagctactgctgcttcccttgtcaagactttgggccgaaga 436
Query: 181 tcccgccgccagcttggcgagcgagtacatttctgtgttcgctgtgatttccccattgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tcccgccgccagcttggcgagcgagtacatttctgtgttcgctgtgatttccccattgct 496
Query: 241 atttatggacgactgagcccttgtgagcatgctttctgcctcgattgtgctagaagtgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atttatggacgactgagcccttgtgagcatgctttctgcctcgattgtgctagaagtgat 556
Query: 301 tcactgtgctacctgtgtgatgaacgaatccagaag 336
||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcactgtgctacctgtgtgatgaacgaatccagaag 592
>gnl|LJGI|TC77487 similar to UniRef100_A7PNZ6 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 547
Score = 198 bits (100), Expect = 2e-50
Identities = 158/168 (94%), Gaps = 7/168 (4%)
Strand = Plus / Plus
Query: 1 atgcttcagattcggcttagcaagactcctgcctcagaagggtcagcgggggtgaaggtg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 286 atgcttcagattcggcttagcaagactcctgcctcaaaagggtcagcgggggtgaaggtg 345
Query: 61 tcacctgctg-agactg-ttacagt-tgcatgccctg-accatct-ggtccttgctgatc 115
|||||||||| | |||| ||| ||| ||||||||||| ||||||| ||||||||||||||
Sbjct: 346 tcacctgctgaaaactgtttaaagtctgcatgccctgaaccatctgggtccttgctgatc 405
Query: 116 ttcctg-ttgcaaagggcatt-ggggcagctactgctgcttcccttgt 161
|||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 406 ttcctgtttgcaaagggcattgggggcagctactgctgcttcccttgt 453