Miyakogusa Predicted Gene
- Lj3g3v1381530.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1381530.1 tr|Q6YYA7|Q6YYA7_ORYSJ Os08g0359600 protein
OS=Oryza sativa subsp. japonica GN=OJ1014_E02.5 PE=3
SV=,77.19,3e-19,40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER,Ribosomal
protein S17; seg,NULL; Nucleic acid-binding protei,CUFF.42516.1
(477 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63060 homologue to UniRef100_A7QA47 Cluster: Chromoso... 416 e-116
gnl|LJGI|FS337086 homologue to UniRef100_A7QA47 Cluster: Chromos... 371 e-102
gnl|LJGI|TC63766 similar to UniRef100_A7QA47 Cluster: Chromosome... 363 e-100
gnl|LJGI|TC60553 homologue to UniRef100_A7QA47 Cluster: Chromoso... 363 e-100
gnl|LJGI|GO024275 similar to UniRef100_A7QA47 Cluster: Chromosom... 355 2e-97
>gnl|LJGI|TC63060 homologue to UniRef100_A7QA47 Cluster: Chromosome undetermined
scaffold_69, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_69, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (85%)
Length = 747
Score = 416 bits (210), Expect = e-116
Identities = 241/254 (94%)
Strand = Plus / Plus
Query: 32 acaaatggagccctaactctgttgagtcactctatcgaccctctcacattccctggtacc 91
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 acaaatggagccctaactctgttgagtcactctatcgaccctctcacattccctggtact 61
Query: 92 ggccgccaccgtcacgccgccgcatccatcggtgctaccagcagcaaagcctctcagacc 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ggccgccaccgtcacgccgccgcatccatcggtgctaccagcagcaaagcctctcagacc 121
Query: 152 gccgtgaaaccctcgccaaggctcaatctcacattnnnnnnnnagtgtgttgtcgtcgtg 211
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 122 gccgtgaaaccctcgccaaggctcaatctcacattccccccccagtgtgttgtcgtcgtg 181
Query: 212 cgtctgaatctggtttaaggattgccggttgggagaggagagaagatgaagcaagtagta 271
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 182 cgtctgaatctggtttaaggattgccggttccgagaggagagaagatgaagcaagtggta 241
Query: 272 ggaatgggggtttc 285
||||||| ||||||
Sbjct: 242 ggaatggtggtttc 255
Score = 371 bits (187), Expect = e-102
Identities = 190/191 (99%)
Strand = Plus / Plus
Query: 287 atcacaaagtgtacaaccgatatgtcaagcgcacctctaaatttatggctcacgatgaga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 atcacaaagtgtacaaccgatatgtcaagcgcacctctaaatttatggctcacgatgaga 362
Query: 347 acaatctctgcaacattggtgaccgggttcgactgaatccttctaggcctctgagcaaga 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 acaatctctgcaacattggtgaccgggttcgactgaatccttctaggcctctgagcaagc 422
Query: 407 ataagtgttgggtggttgctgaaattctcaagaaagcacgtatatatgttcctccaacct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ataagtgttgggtggttgctgaaattctcaagaaagcacgtatatatgttcctccaacct 482
Query: 467 ccacaccctga 477
|||||||||||
Sbjct: 483 ccacaccctga 493
>gnl|LJGI|FS337086 homologue to UniRef100_A7QA47 Cluster: Chromosome undetermined
scaffold_69, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_69, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (85%)
Length = 739
Score = 371 bits (187), Expect = e-102
Identities = 190/191 (99%)
Strand = Plus / Plus
Query: 287 atcacaaagtgtacaaccgatatgtcaagcgcacctctaaatttatggctcacgatgaga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atcacaaagtgtacaaccgatatgtcaagcgcacctctaaatttatggctcacgatgaga 329
Query: 347 acaatctctgcaacattggtgaccgggttcgactgaatccttctaggcctctgagcaaga 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 acaatctctgcaacattggtgaccgggttcgactgaatccttctaggcctctgagcaagc 389
Query: 407 ataagtgttgggtggttgctgaaattctcaagaaagcacgtatatatgttcctccaacct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ataagtgttgggtggttgctgaaattctcaagaaagcacgtatatatgttcctccaacct 449
Query: 467 ccacaccctga 477
|||||||||||
Sbjct: 450 ccacaccctga 460
Score = 359 bits (181), Expect = 1e-98
Identities = 209/221 (94%)
Strand = Plus / Plus
Query: 65 atcgaccctctcacattccctggtaccggccgccaccgtcacgccgccgcatccatcggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 atcgaccctctcacattccctggtaccggccgccaccgtcacgccgccgcatccatcggt 61
Query: 125 gctaccagcagcaaagcctctcagaccgccgtgaaaccctcgccaaggctcaatctcaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gctaccagcagcaaagcctctcagaccgccgtgaaaccctcgccaaggctcaatctcaca 121
Query: 185 ttnnnnnnnnagtgtgttgtcgtcgtgcgtctgaatctggtttaaggattgccggttggg 244
|| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 122 ttccccccccagtgtgttgtcgtcgtgcgtctgaatctggtttaaggattgccggttccg 181
Query: 245 agaggagagaagatgaagcaagtagtaggaatgggggtttc 285
||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 182 agaggagagaagatgaagcaagtggtaggaatggtggtttc 222
>gnl|LJGI|TC63766 similar to UniRef100_A7QA47 Cluster: Chromosome undetermined
scaffold_69, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_69, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (85%)
Length = 712
Score = 363 bits (183), Expect = e-100
Identities = 186/187 (99%)
Strand = Plus / Plus
Query: 287 atcacaaagtgtacaaccgatatgtcaagcgcacctctaaatttatggctcacgatgaga 346
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 239 atcacaaagtgtacaaccgatacgtcaagcgcacctctaaatttatggctcacgatgaga 298
Query: 347 acaatctctgcaacattggtgaccgggttcgactgaatccttctaggcctctgagcaaga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 acaatctctgcaacattggtgaccgggttcgactgaatccttctaggcctctgagcaaga 358
Query: 407 ataagtgttgggtggttgctgaaattctcaagaaagcacgtatatatgttcctccaacct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ataagtgttgggtggttgctgaaattctcaagaaagcacgtatatatgttcctccaacct 418
Query: 467 ccacacc 473
|||||||
Sbjct: 419 ccacacc 425
Score = 167 bits (84), Expect = 8e-41
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 196 gtgtgttgtcgtcgtgcgtctgaatctggtttaaggattgccggttgggagaggagagaa 255
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gtgtgttgccgtcgtgcgtctgaatctggtttaaggattgccggttgggagaggagagaa 161
Query: 256 gatgaagcaagtagtaggaatgggggtttcga 287
||||||||||||||||||||||| ||||||||
Sbjct: 162 gatgaagcaagtagtaggaatggtggtttcga 193
>gnl|LJGI|TC60553 homologue to UniRef100_A7QA47 Cluster: Chromosome undetermined
scaffold_69, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_69, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (85%)
Length = 846
Score = 363 bits (183), Expect = e-100
Identities = 186/187 (99%)
Strand = Plus / Plus
Query: 287 atcacaaagtgtacaaccgatatgtcaagcgcacctctaaatttatggctcacgatgaga 346
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 274 atcacaaagtgtacaaccgatacgtcaagcgcacctctaaatttatggctcacgatgaga 333
Query: 347 acaatctctgcaacattggtgaccgggttcgactgaatccttctaggcctctgagcaaga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acaatctctgcaacattggtgaccgggttcgactgaatccttctaggcctctgagcaaga 393
Query: 407 ataagtgttgggtggttgctgaaattctcaagaaagcacgtatatatgttcctccaacct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ataagtgttgggtggttgctgaaattctcaagaaagcacgtatatatgttcctccaacct 453
Query: 467 ccacacc 473
|||||||
Sbjct: 454 ccacacc 460
Score = 174 bits (88), Expect = 3e-43
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 196 gtgtgttgtcgtcgtgcgtctgaatctggtttaaggattgccggttgggagaggagagaa 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gtgtgttgtcgtcgtgcgtctgaatctggtttaaggattgccggttgggagaggagagaa 196
Query: 256 gatgaagcaagtagtaggaatgggggtttcga 287
||||||||||||||||||||||| ||||||||
Sbjct: 197 gatgaagcaagtagtaggaatggtggtttcga 228
>gnl|LJGI|GO024275 similar to UniRef100_A7QA47 Cluster: Chromosome undetermined
scaffold_69, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_69, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (85%)
Length = 602
Score = 355 bits (179), Expect = 2e-97
Identities = 185/187 (98%)
Strand = Plus / Plus
Query: 287 atcacaaagtgtacaaccgatatgtcaagcgcacctctaaatttatggctcacgatgaga 346
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 205 atcacaaagtgtacaaccgatacgtcaagcgcacctctaaatctatggctcacgatgaga 264
Query: 347 acaatctctgcaacattggtgaccgggttcgactgaatccttctaggcctctgagcaaga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaatctctgcaacattggtgaccgggttcgactgaatccttctaggcctctgagcaaga 324
Query: 407 ataagtgttgggtggttgctgaaattctcaagaaagcacgtatatatgttcctccaacct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataagtgttgggtggttgctgaaattctcaagaaagcacgtatatatgttcctccaacct 384
Query: 467 ccacacc 473
|||||||
Sbjct: 385 ccacacc 391
Score = 107 bits (54), Expect = 6e-23
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 230 ggattgccggttgggagaggagagaagatgaagcaagtagtaggaatgggggtttcga 287
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 102 ggattgccggttgggagaggagagaagatgaagcaagtagtaggaatggtggtttcga 159