Miyakogusa Predicted Gene
- Lj3g3v1307390.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1307390.1 Non Chatacterized Hit- tr|H3F941|H3F941_PRIPA
Uncharacterized protein OS=Pristionchus pacificus GN=W,56.25,3e-19,no
description,Aconitase/3-isopropylmalate dehydratase, swivel;
LeuD/IlvD-like,Aconitase/3-isopropyl,gene.g47166.t1.1
(252 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC65344 homologue to UniRef100_P49608 Cluster: Aconitat... 500 e-141
gnl|LJGI|TC76676 homologue to UniRef100_Q9SIB9 Cluster: Aconitat... 163 6e-40
gnl|LJGI|TC75359 homologue to UniRef100_P49608 Cluster: Aconitat... 163 6e-40
gnl|LJGI|TC78889 similar to UniRef100_A7R1Q8 Cluster: Chromosome... 74 4e-13
>gnl|LJGI|TC65344 homologue to UniRef100_P49608 Cluster: Aconitate hydratase,
cytoplasmic; n=1; Cucurbita maxima|Rep: Aconitate
hydratase, cytoplasmic - Cucurbita maxima (Pumpkin)
(Winter squash), partial (20%)
Length = 1032
Score = 500 bits (252), Expect = e-141
Identities = 252/252 (100%)
Strand = Plus / Plus
Query: 1 atgggtatcattcctctttgcttcaaatctggtgaggatgctgacacattgggattgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 atgggtatcattcctctttgcttcaaatctggtgaggatgctgacacattgggattgact 354
Query: 61 ggccatgaacggttttccattgaccttccaaataatatcagtgagataaggcctggccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggccatgaacggttttccattgaccttccaaataatatcagtgagataaggcctggccaa 414
Query: 121 gatgtcactgtcagaaccgatagtggaaaatctttcacctgcacagttcgctttgacact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gatgtcactgtcagaaccgatagtggaaaatctttcacctgcacagttcgctttgacact 474
Query: 181 gaggtggagctggagtattttaaccatggaggcattcttccatatgtcatcaggaatctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaggtggagctggagtattttaaccatggaggcattcttccatatgtcatcaggaatctc 534
Query: 241 actaggcagtga 252
||||||||||||
Sbjct: 535 actaggcagtga 546
>gnl|LJGI|TC76676 homologue to UniRef100_Q9SIB9 Cluster: Aconitate hydratase 2,
mitochondrial precursor; n=2; Arabidopsis thaliana|Rep:
Aconitate hydratase 2, mitochondrial precursor -
Arabidopsis thaliana (Mouse-ear cress), partial (16%)
Length = 1027
Score = 163 bits (82), Expect = 6e-40
Identities = 192/230 (83%), Gaps = 9/230 (3%)
Strand = Plus / Plus
Query: 1 atgggtatcattcctctttgcttcaaatctggtgaggatgctgacacattgggattgact 60
|||||||| ||||| ||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct: 251 atgggtattattcccctttgtttcaaatccggggaggatgcggacacattgggattgact 310
Query: 61 ggccatgaacggttttccattgaccttccaaataatatcagtgagataaggcctggccaa 120
|| |||||||| | | | ||||||||||| | ||||||| ||||||||||||
Sbjct: 311 ggtcatgaacgttatacgattgaccttccta---------gtgagatcaggcctggccaa 361
Query: 121 gatgtcactgtcagaaccgatagtggaaaatctttcacctgcacagttcgctttgacact 180
||||| || |||| ||| |||| |||||||||||||||||||| | | |||||||| |||
Sbjct: 362 gatgtgacggtcacaactgataatggaaaatctttcacctgcaaattacgctttgatact 421
Query: 181 gaggtggagctggagtattttaaccatggaggcattcttccatatgtcat 230
|||||||| || | || || |||||||||||||| ||||||||||||||
Sbjct: 422 gaggtggaacttgcttacttcaaccatggaggcatacttccatatgtcat 471
>gnl|LJGI|TC75359 homologue to UniRef100_P49608 Cluster: Aconitate hydratase,
cytoplasmic; n=1; Cucurbita maxima|Rep: Aconitate
hydratase, cytoplasmic - Cucurbita maxima (Pumpkin)
(Winter squash), partial (28%)
Length = 900
Score = 163 bits (82), Expect = 6e-40
Identities = 192/230 (83%), Gaps = 9/230 (3%)
Strand = Plus / Plus
Query: 1 atgggtatcattcctctttgcttcaaatctggtgaggatgctgacacattgggattgact 60
|||||||| ||||| ||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct: 521 atgggtattattcccctttgtttcaaatccggggaggatgcggacacattgggattgact 580
Query: 61 ggccatgaacggttttccattgaccttccaaataatatcagtgagataaggcctggccaa 120
|| |||||||| | | | ||||||||||| | ||||||| ||||||||||||
Sbjct: 581 ggtcatgaacgttatacgattgaccttccta---------gtgagatcaggcctggccaa 631
Query: 121 gatgtcactgtcagaaccgatagtggaaaatctttcacctgcacagttcgctttgacact 180
||||| || |||| ||| |||| |||||||||||||||||||| | | |||||||| |||
Sbjct: 632 gatgtgacggtcacaactgataatggaaaatctttcacctgcaaattacgctttgatact 691
Query: 181 gaggtggagctggagtattttaaccatggaggcattcttccatatgtcat 230
|||||||| || | || || |||||||||||||| ||||||||||||||
Sbjct: 692 gaggtggaacttgcttacttcaaccatggaggcatacttccatatgtcat 741
>gnl|LJGI|TC78889 similar to UniRef100_A7R1Q8 Cluster: Chromosome chr4 scaffold_373,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_373, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (93%)
Length = 1851
Score = 73.8 bits (37), Expect = 4e-13
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 1 atgggtatcattcctctttgcttcaaatctggtgaggatgctgacacattgggattgact 60
|||||||| || ||||| || ||||| ||||||||||||||||| || | |||||||||
Sbjct: 1194 atgggtattatccctctgtgtttcaagtctggtgaggatgctgatactcttggattgact 1253
Query: 61 ggccatgaacggttttccattgaccttcc 89
||||||||||| || ||||||| |||||
Sbjct: 1254 ggccatgaacgtttcaccattgatcttcc 1282