Miyakogusa Predicted Gene
- Lj3g3v1296990.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1296990.1 tr|F2CPY5|F2CPY5_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,77.59,9e-18,RING/U-box,NULL; zf-RING_2,Zinc finger, RING-type;
ZF_RING_2,Zinc finger, RING-type; no description,,CUFF.42419.1
(828 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63585 similar to UniRef100_Q2HT04 Cluster: Zinc finge... 1273 0.0
gnl|LJGI|TC74108 homologue to UniRef100_Q2HT04 Cluster: Zinc fin... 1104 0.0
gnl|LJGI|TC63190 similar to UniRef100_Q2HT04 Cluster: Zinc finge... 167 1e-40
gnl|LJGI|BW597642 similar to UniRef100_Q2HT04 Cluster: Zinc fing... 143 2e-33
gnl|LJGI|TC66770 similar to UniRef100_Q2HT04 Cluster: Zinc finge... 135 5e-31
>gnl|LJGI|TC63585 similar to UniRef100_Q2HT04 Cluster: Zinc finger, RING-type; n=1;
Medicago truncatula|Rep: Zinc finger, RING-type -
Medicago truncatula (Barrel medic), partial (52%)
Length = 716
Score = 1273 bits (642), Expect = 0.0
Identities = 642/642 (100%)
Strand = Plus / Plus
Query: 1 atggaggttcctgtgatggaagagaatgaaactaccaagagtgaggctcatttgacttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 atggaggttcctgtgatggaagagaatgaaactaccaagagtgaggctcatttgacttct 134
Query: 61 gctgctgcgtttgtggagggtggaattcaggatgcttgtgatgatgcttgcagcatatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gctgctgcgtttgtggagggtggaattcaggatgcttgtgatgatgcttgcagcatatgc 194
Query: 121 cttgaggatttctgtgacagtgagccttctacggtgacaggttgcaagcacgagtttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 cttgaggatttctgtgacagtgagccttctacggtgacaggttgcaagcacgagtttcat 254
Query: 181 cttcagtgtattctggaatggtgtcagagaagctcccagtgccccatgtgttggcagcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cttcagtgtattctggaatggtgtcagagaagctcccagtgccccatgtgttggcagcct 314
Query: 241 atcagtctcaaagatcctacaagtcaggaattgcttgaggctgtggaaagagagaggaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atcagtctcaaagatcctacaagtcaggaattgcttgaggctgtggaaagagagaggaac 374
Query: 301 gttaggttcaatccatctagaaatgctgcaatatttcatcatccaacactgggagatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gttaggttcaatccatctagaaatgctgcaatatttcatcatccaacactgggagatttt 434
Query: 361 gagttacaacatttgccagttggagcaaatgatgctgatcttgaagagcgaataatccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gagttacaacatttgccagttggagcaaatgatgctgatcttgaagagcgaataatccaa 494
Query: 421 cacctagctgctgctgcagcaatggggcgagcacgtcatattgctagaagggagggccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cacctagctgctgctgcagcaatggggcgagcacgtcatattgctagaagggagggccag 554
Query: 481 aggaacaggtcatcagctcaaggccgtccacaatttttggtattttcaactcaccctaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aggaacaggtcatcagctcaaggccgtccacaatttttggtattttcaactcaccctaat 614
Query: 541 tcacctcccgtagcccctgcttcttcctctctaaatcagaggggggatggtgaaccagct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tcacctcccgtagcccctgcttcttcctctctaaatcagaggggggatggtgaaccagct 674
Query: 601 ccagcagttgctgttgccactctgtctcaaactcctgcaact 642
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ccagcagttgctgttgccactctgtctcaaactcctgcaact 716
>gnl|LJGI|TC74108 homologue to UniRef100_Q2HT04 Cluster: Zinc finger, RING-type; n=1;
Medicago truncatula|Rep: Zinc finger, RING-type -
Medicago truncatula (Barrel medic), partial (46%)
Length = 668
Score = 1104 bits (557), Expect = 0.0
Identities = 560/561 (99%)
Strand = Plus / Plus
Query: 1 atggaggttcctgtgatggaagagaatgaaactaccaagagtgaggctcatttgacttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 atggaggttcctgtgatggaagagaatgaaactaccaagagtgaggctcatttgacttct 167
Query: 61 gctgctgcgtttgtggagggtggaattcaggatgcttgtgatgatgcttgcagcatatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gctgctgcgtttgtggagggtggaattcaggatgcttgtgatgatgcttgcagcatatgc 227
Query: 121 cttgaggatttctgtgacagtgagccttctacggtgacaggttgcaagcacgagtttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 cttgaggatttctgtgacagtgagccttctacggtgacaggttgcaagcacgagtttcat 287
Query: 181 cttcagtgtattctggaatggtgtcagagaagctcccagtgccccatgtgttggcagcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cttcagtgtattctggaatggtgtcagagaagctcccagtgccccatgtgttggcagcct 347
Query: 241 atcagtctcaaagatcctacaagtcaggaattgcttgaggctgtggaaagagagaggaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atcagtctcaaagatcctacaagtcaggaattgcttgaggctgtggaaagagagaggaac 407
Query: 301 gttaggttcaatccatctagaaatgctgcaatatttcatcatccaacactgggagatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gttaggttcaatccatctagaaatgctgcaatatttcatcatccaacactgggagatttt 467
Query: 361 gagttacaacatttgccagttggagcaaatgatgctgatcttgaagagcgaataatccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gagttacaacatttgccagttggagcaaatgatgctgatcttgaagagcgaataatccaa 527
Query: 421 cacctagctgctgctgcagcaatggggcgagcacgtcatattgctagaagggagggccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cacctagctgctgctgcagcaatggggcgagcacgtcatattgctagaagggagggccag 587
Query: 481 aggaacaggtcatcagctcaaggccgtccacaatttttggtattttcaactcaccctaat 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 588 aggaacaggtcatcagctcaaggccgtccacaatttttggtattttcagctcaccctaat 647
Query: 541 tcacctcccgtagcccctgct 561
|||||||||||||||||||||
Sbjct: 648 tcacctcccgtagcccctgct 668
>gnl|LJGI|TC63190 similar to UniRef100_Q2HT04 Cluster: Zinc finger, RING-type; n=1;
Medicago truncatula|Rep: Zinc finger, RING-type -
Medicago truncatula (Barrel medic), partial (36%)
Length = 1027
Score = 167 bits (84), Expect = 1e-40
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 741 gggatcatcttacatcaataggcaatcatcatttgtttatgttgataaattcttagttgc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gggatcatcttacatcaataggcaatcatcatttgtttatgttgataaattcttagttgc 61
Query: 801 atatttttctagctttagatgttcttaa 828
|| |||||||||||||||||||||||||
Sbjct: 62 atgtttttctagctttagatgttcttaa 89
>gnl|LJGI|BW597642 similar to UniRef100_Q2HT04 Cluster: Zinc finger, RING-type; n=1;
Medicago truncatula|Rep: Zinc finger, RING-type -
Medicago truncatula (Barrel medic), partial (29%)
Length = 480
Score = 143 bits (72), Expect = 2e-33
Identities = 123/140 (87%)
Strand = Plus / Plus
Query: 97 tgtgatgatgcttgcagcatatgccttgaggatttctgtgacagtgagccttctacggtg 156
|||||||||||||||||||||||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 209 tgtgatgatgcttgcagcatatgccttgaggagttttgtgaaagtgatccttcaacggtc 268
Query: 157 acaggttgcaagcacgagtttcatcttcagtgtattctggaatggtgtcagagaagctcc 216
|| | ||||| ||| |||||||| || ||||| ||||| |||||||||||||||||||||
Sbjct: 269 actgtttgcaggcatgagtttcacctgcagtgcattcttgaatggtgtcagagaagctcc 328
Query: 217 cagtgccccatgtgttggca 236
|| || || |||||||||||
Sbjct: 329 caatgtcctatgtgttggca 348
>gnl|LJGI|TC66770 similar to UniRef100_Q2HT04 Cluster: Zinc finger, RING-type; n=1;
Medicago truncatula|Rep: Zinc finger, RING-type -
Medicago truncatula (Barrel medic), partial (66%)
Length = 1499
Score = 135 bits (68), Expect = 5e-31
Identities = 122/140 (87%)
Strand = Plus / Plus
Query: 97 tgtgatgatgcttgcagcatatgccttgaggatttctgtgacagtgagccttctacggtg 156
|||||||||||||||||||||||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 136 tgtgatgatgcttgcagcatatgccttgaggagttttgtgaaagtgatccttcaacggtc 195
Query: 157 acaggttgcaagcacgagtttcatcttcagtgtattctggaatggtgtcagagaagctcc 216
| | ||||| ||| |||||||| || ||||| ||||| |||||||||||||||||||||
Sbjct: 196 cctgtttgcaggcatgagtttcacctgcagtgcattcttgaatggtgtcagagaagctcc 255
Query: 217 cagtgccccatgtgttggca 236
|| || || |||||||||||
Sbjct: 256 caatgtcctatgtgttggca 275