Miyakogusa Predicted Gene

Lj3g3v1132370.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v1132370.1 tr|F8EQY8|F8EQY8_RUNSL Bacteroides conjugation
system ATPase, TraG family OS=Runella slithyformis (s,35.71,5.2,
,CUFF.42275.1
         (201 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC75772 similar to UniRef100_A5BHQ5 Cluster: Ubiquitin ...   311   9e-85
gnl|LJGI|TC57853 similar to UniRef100_A5BHQ5 Cluster: Ubiquitin ...   105   1e-22

>gnl|LJGI|TC75772 similar to UniRef100_A5BHQ5 Cluster: Ubiquitin carrier protein;
           n=1; Vitis vinifera|Rep: Ubiquitin carrier protein -
           Vitis vinifera (Grape), partial (43%)
          Length = 538

 Score =  311 bits (157), Expect = 9e-85
 Identities = 190/201 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgattacctttttaagcctccaaaagtcaaatttgaattcacctgcttcaatcccaatc 60
           |||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 58  atgactacctttttaagcctcccaaagtcaaatttgaattcacctgcttcgatcccaatc 117

                                                                       
Query: 61  acaatgctgatgtgcatggcaacatatgctcggaaatacttctggataagtggtcatatg 120
           || ||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct: 118 accatgctgatgtgcatggccacatatgcttggaaatagttctggataagtggtcatatg 177

                                                                       
Query: 121 catatgatgtcactgtcagagcaattctattatctatccaaagtctacttggagagccaa 180
           |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
Sbjct: 178 catatgatgtcactgtcagagccattctattatctatcccaagtctacttggagagccca 237

                                
Query: 181 atatttgttcacaactaaatc 201
           |||||||||||| ||||||||
Sbjct: 238 atatttgttcacgactaaatc 258


>gnl|LJGI|TC57853 similar to UniRef100_A5BHQ5 Cluster: Ubiquitin carrier protein;
           n=1; Vitis vinifera|Rep: Ubiquitin carrier protein -
           Vitis vinifera (Grape), partial (90%)
          Length = 882

 Score =  105 bits (53), Expect = 1e-22
 Identities = 118/140 (84%), Gaps = 6/140 (4%)
 Strand = Plus / Plus

                                                                       
Query: 62  caatgctgatgtgcatggcaacatatgctcggaaatacttctggataagtggtcatatgc 121
           ||||| |||||| || ||||||||||||| ||| ||||||| |||||||||||| | |||
Sbjct: 463 caatgttgatgtccaaggcaacatatgcttggacatacttcaggataagtggtcctctgc 522

                                                                       
Query: 122 atatgatgtcactgtcagagcaattctattatctatccaaagtctacttggagagccaaa 181
           ||||||||| |      |  ||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 523 atatgatgtga------ggacaattctgttatccatccaaagtctgcttggagagccaaa 576

                               
Query: 182 tatttgttcacaactaaatc 201
           |||| |||||| ||||||||
Sbjct: 577 tattagttcaccactaaatc 596