Miyakogusa Predicted Gene

Lj3g3v1128980.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v1128980.1 tr|B9HQK9|B9HQK9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_556937 PE=4 SV=1,54.2,0,seg,NULL;
no description,NULL; ATHOOK,AT hook-like;
AF0104/ALDC/Ptd012-like,NULL; DUF296,Domain of u,gene.g46923.t1.1
         (1017 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73445 similar to UniRef100_O14559 Cluster: TC10/CDC42...   436   e-121

>gnl|LJGI|TC73445 similar to UniRef100_O14559 Cluster: TC10/CDC42 GTPase-activating
           protein; n=1; Homo sapiens|Rep: TC10/CDC42
           GTPase-activating protein - Homo sapiens (Human),
           partial (3%)
          Length = 460

 Score =  436 bits (220), Expect = e-121
 Identities = 220/220 (100%)
 Strand = Plus / Plus

                                                                       
Query: 99  aaacaccgcaccagaatccgccgtcggagaagcgtctgtggctgcaggatcaggacaggt 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaacaccgcaccagaatccgccgtcggagaagcgtctgtggctgcaggatcaggacaggt 300

                                                                       
Query: 159 ggtgaaaagggggagggggaggccacggaaaaaccaggctaatgggagccacccgccgcc 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggtgaaaagggggagggggaggccacggaaaaaccaggctaatgggagccacccgccgcc 360

                                                                       
Query: 219 ggcgacgccgccgcagccggaattggctattcaactttatggaggaggtgatgttgtcaa 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggcgacgccgccgcagccggaattggctattcaactttatggaggaggtgatgttgtcaa 420

                                                   
Query: 279 gcgaggcaggggacgccctcgtggttctgggaagctgcag 318
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcgaggcaggggacgccctcgtggttctgggaagctgcag 460



 Score =  135 bits (68), Expect = 6e-31
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaggaccaggctcattcccagaattccaccctgcagaacgggtcagaaatcaacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 atggaggaccaggctcattcccagaattccaccctgcagaacgggtcagaaatcaacaag 202

                   
Query: 61  gagcaagt 68
           ||||||||
Sbjct: 203 gagcaagt 210